Analysis of interatomic Contacts of Structural Units in PDB entry:
2VYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VYV entry

There are 12 chains in PDB entry 2VYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 0SER 147
A
 THR 149VAL 286
A
 THR 288LYS 329
B
 THR 0SER 147
B
 THR 149VAL 286
B
 THR 288LYS 329
C
 THR 0SER 147
C
 THR 149VAL 286
C
 THR 288LYS 329
D
 MET 0GLN 74
D
 LYS 76SER 148
D
 THR 150LYS 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 2VYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
35 45Right-handed alpha
Helix 3
3
A
77 81Right-handed 310
Helix 4
4
A
82 87Right-handed 310
Helix 5
5
A
100 105Right-handed alpha
Helix 6
6
A
105 110Right-handed alpha
Helix 7
7
A
133 137Right-handed 310
Helix 8
8
A
147 165Right-handed alpha
Helix 9
9
A
191 196Right-handed 310
Helix 10
10
A
197 201Right-handed 310
Helix 11
11
A
210 217Right-handed alpha
Helix 12
12
A
218 221Right-handed 310
Helix 13
13
A
250 264Right-handed alpha
Helix 14
14
A
278 283Right-handed 310
Helix 15
15
A
313 328Right-handed alpha
Helix 16
16
B
9 20Right-handed alpha
Helix 17
17
B
35 45Right-handed alpha
Helix 18
18
B
77 81Right-handed 310
Helix 19
19
B
82 86Right-handed 310
Helix 20
20
B
100 105Right-handed alpha
Helix 21
21
B
105 110Right-handed alpha
Helix 22
22
B
133 137Right-handed 310
Helix 23
23
B
147 165Right-handed alpha
Helix 24
24
B
192 196Right-handed 310
Helix 25
25
B
208 217Right-handed alpha
Helix 26
26
B
218 221Right-handed 310
Helix 27
27
B
250 264Right-handed alpha
Helix 28
28
B
278 283Right-handed 310
Helix 29
29
B
313 329Right-handed alpha
Helix 30
30
C
9 20Right-handed alpha
Helix 31
31
C
35 45Right-handed alpha
Helix 32
32
C
77 81Right-handed 310
Helix 33
33
C
82 86Right-handed 310
Helix 34
34
C
100 105Right-handed alpha
Helix 35
35
C
105 110Right-handed alpha
Helix 36
36
C
133 137Right-handed 310
Helix 37
37
C
147 165Right-handed alpha
Helix 38
38
C
192 196Right-handed 310
Helix 39
39
C
211 217Right-handed alpha
Helix 40
40
C
218 221Right-handed 310
Helix 41
41
C
250 264Right-handed alpha
Helix 42
42
C
278 283Right-handed 310
Helix 43
43
C
313 328Right-handed alpha
Helix 44
44
D
9 23Right-handed alpha
Helix 45
45
D
35 45Right-handed alpha
Helix 46
46
D
77 81Right-handed 310
Helix 47
47
D
82 87Right-handed 310
Helix 48
48
D
100 105Right-handed alpha
Helix 49
49
D
105 110Right-handed alpha
Helix 50
50
D
132 136Right-handed 310
Helix 51
51
D
148 166Right-handed alpha
Helix 52
52
D
192 197Right-handed 310
Helix 53
53
D
209 218Right-handed alpha
Helix 54
54
D
219 222Right-handed 310
Helix 55
55
D
251 265Right-handed alpha
Helix 56
56
D
279 284Right-handed 310
Helix 57
57
D
295 297Right-handed 310
Helix 58
58
D
314 331Right-handed alpha
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There are 11 sheets in PDB entry 2VYV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
68 73anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
1 6parallel
Strand 6
A
90 93parallel
Strand 7
A
114 117parallel
Strand 8
A
142 144parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
166 176parallel
Strand 4
A
237 245anti-parallel
Strand 5
A
303 310anti-parallel
Strand 6
A
289 300anti-parallel
Strand 7
A
270 273parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
62 65anti-parallel
Strand 3
B
68 73anti-parallel
Strand 4
B
25 31parallel
Strand 5
B
1 6parallel
Strand 6
B
90 93parallel
Strand 7
B
114 117parallel
Strand 8
B
142 144parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
224 230anti-parallel
Strand 3
B
166 175parallel
Strand 4
B
237 245anti-parallel
Strand 5
B
303 310anti-parallel
Strand 6
B
289 292anti-parallel
Strand 7
B
270 273parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 205first strand
Strand 2
B
224 230anti-parallel
Strand 3
B
166 175parallel
Strand 4
B
237 245anti-parallel
Strand 5
B
303 310anti-parallel
Strand 6
B
297 300anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
63 65anti-parallel
Strand 3
C
68 73anti-parallel
Strand 4
C
25 31parallel
Strand 5
C
1 6parallel
Strand 6
C
90 93parallel
Strand 7
C
114 117parallel
Strand 8
C
142 144parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 206first strand
Strand 2
C
224 230anti-parallel
Strand 3
C
166 175parallel
Strand 4
C
237 245anti-parallel
Strand 5
C
303 310anti-parallel
Strand 6
C
289 292anti-parallel
Strand 7
C
270 273parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
203 206first strand
Strand 2
C
224 230anti-parallel
Strand 3
C
166 175parallel
Strand 4
C
237 245anti-parallel
Strand 5
C
303 310anti-parallel
Strand 6
C
297 300anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 59first strand
Strand 2
D
62 65anti-parallel
Strand 3
D
68 73anti-parallel
Strand 4
D
25 30parallel
Strand 5
D
2 6parallel
Strand 6
D
90 93parallel
Strand 7
D
115 117parallel
Strand 8
D
143 145parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 206first strand
Strand 2
D
225 232anti-parallel
Strand 3
D
167 177parallel
Strand 4
D
238 246anti-parallel
Strand 5
D
304 311anti-parallel
Strand 6
D
290 293anti-parallel
Strand 7
D
271 274parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 206first strand
Strand 2
D
225 232anti-parallel
Strand 3
D
167 177parallel
Strand 4
D
238 246anti-parallel
Strand 5
D
304 311anti-parallel
Strand 6
D
298 301anti-parallel
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