Analysis of interatomic Contacts of Structural Units in PDB entry:
2VYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VYX entry

There are 12 chains in PDB entry 2VYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2THR 69
B
 GLY 2GLU 67
C
 GLY 2THR 69
D
 GLY 2THR 69
E
 GLY 2THR 69
F
 GLY 2THR 69
G
 GLY 2THR 69
H
 GLY 2THR 69
I
 GLY 2THR 69
J
 GLY 2THR 69
K
 GLY 2THR 69
L
 GLY 2GLU 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2VYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 33Right-handed alpha
Helix 2
2
B
17 33Right-handed alpha
Helix 3
3
C
17 33Right-handed alpha
Helix 4
4
D
17 33Right-handed alpha
Helix 5
5
E
17 33Right-handed alpha
Helix 6
6
F
17 33Right-handed alpha
Helix 7
7
G
17 33Right-handed alpha
Helix 8
8
H
17 31Right-handed alpha
Helix 9
9
I
17 33Right-handed alpha
Helix 10
10
J
17 33Right-handed alpha
Helix 11
11
K
17 33Right-handed alpha
Helix 12
12
L
17 31Right-handed alpha
Back to top of page

There is 1 sheet ( AA) in PDB entry 2VYX.

There are 88 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 14first strand
Strand 2
H
4 14parallel
Strand 3
H
52 65parallel
Strand 4
H
36 49parallel
Strand 5
G
36 49parallel
Strand 6
G
52 65parallel
Strand 7
G
4 14parallel
Strand 8
B
4 14parallel
Strand 9
F
4 14parallel
Strand 10
F
52 65parallel
Strand 11
F
36 49parallel
Strand 12
D
36 49parallel
Strand 13
D
52 65parallel
Strand 14
D
4 14parallel
Strand 15
K
4 14parallel
Strand 16
K
52 65parallel
Strand 17
K
36 49parallel
Strand 18
J
36 49parallel
Strand 19
A
36 49first strand
Strand 20
A
52 65parallel
Strand 21
A
52 65first strand
Strand 22
A
4 14parallel
Strand 23
B
4 14first strand
Strand 24
F
4 14parallel
Strand 25
B
36 49first strand
Strand 26
A
36 49parallel
Strand 27
B
52 65first strand
Strand 28
B
4 14parallel
Strand 29
C
4 14first strand
Strand 30
J
4 14parallel
Strand 31
C
36 49first strand
Strand 32
A
36 49parallel
Strand 33
C
52 65first strand
Strand 34
C
4 14parallel
Strand 35
D
4 14first strand
Strand 36
K
4 14parallel
Strand 37
D
36 49first strand
Strand 38
D
52 65parallel
Strand 39
D
52 65first strand
Strand 40
D
4 14parallel
Strand 41
E
4 14first strand
Strand 42
C
4 14parallel
Strand 43
E
36 49first strand
Strand 44
D
36 49parallel
Strand 45
E
52 65first strand
Strand 46
E
4 14parallel
Strand 47
F
4 14first strand
Strand 48
B
4 14parallel
Strand 49
F
36 49first strand
Strand 50
D
36 49parallel
Strand 51
F
52 65first strand
Strand 52
F
4 14parallel
Strand 53
G
4 14parallel
Strand 54
B
4 14parallel
Strand 55
G
36 49first strand
Strand 56
G
52 65parallel
Strand 57
G
52 65first strand
Strand 58
G
4 14parallel
Strand 59
H
4 14first strand
Strand 60
A
4 14parallel
Strand 61
H
36 49first strand
Strand 62
G
36 49parallel
Strand 63
H
52 65first strand
Strand 64
H
4 14parallel
Strand 65
I
4 14first strand
Strand 66
D
4 14parallel
Strand 67
I
36 49first strand
Strand 68
G
36 49parallel
Strand 69
I
52 65first strand
Strand 70
I
4 14parallel
Strand 71
J
4 14first strand
Strand 72
C
4 14parallel
Strand 73
J
36 49first strand
Strand 74
J
52 65parallel
Strand 75
J
52 65first strand
Strand 76
J
4 14parallel
Strand 77
K
4 14first strand
Strand 78
D
4 14parallel
Strand 79
K
36 49first strand
Strand 80
J
36 49parallel
Strand 81
K
52 65first strand
Strand 82
K
4 14parallel
Strand 83
L
4 14first strand
Strand 84
A
4 14parallel
Strand 85
L
36 49first strand
Strand 86
J
36 49parallel
Strand 87
L
52 65first strand
Strand 88
L
4 14parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il