Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VZ6 entry

There are 2 chains in PDB entry 2VZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -5LEU 299
B
 LEU -5LYS 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2VZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-4 0Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
47 49Right-handed 310
Helix 4
4
A
50 67Right-handed alpha
Helix 5
5
A
96 103Right-handed alpha
Helix 6
6
A
108 129Right-handed alpha
Helix 7
7
A
137 139Right-handed 310
Helix 8
8
A
176 180Right-handed 310
Helix 9
9
A
181 186Right-handed alpha
Helix 10
10
A
192 209Right-handed alpha
Helix 11
11
A
217 228Right-handed alpha
Helix 12
12
A
235 240Right-handed 310
Helix 13
13
A
241 252Right-handed alpha
Helix 14
14
A
261 266Right-handed alpha
Helix 15
15
A
268 273Right-handed alpha
Helix 16
16
A
273 278Right-handed alpha
Helix 17
17
A
283 299Right-handed alpha
Helix 18
18
B
-4 0Right-handed alpha
Helix 19
19
B
47 49Right-handed 310
Helix 20
20
B
50 56Right-handed alpha
Helix 21
21
B
56 67Right-handed alpha
Helix 22
22
B
97 103Right-handed alpha
Helix 23
23
B
108 129Right-handed alpha
Helix 24
24
B
137 139Right-handed 310
Helix 25
25
B
176 180Right-handed 310
Helix 26
26
B
181 187Right-handed alpha
Helix 27
27
B
192 209Right-handed alpha
Helix 28
28
B
217 228Right-handed alpha
Helix 29
29
B
241 252Right-handed alpha
Helix 30
30
B
255 259Right-handed 310
Helix 31
31
B
261 267Right-handed alpha
Helix 32
32
B
268 273Right-handed alpha
Helix 33
33
B
273 278Right-handed alpha
Helix 34
34
B
283 300Right-handed alpha
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There are 6 sheets in PDB entry 2VZ6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 20first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
37 45anti-parallel
Strand 4
A
84 90anti-parallel
Strand 5
A
75 80anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
161 162anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
152 154anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 21first strand
Strand 2
B
25 32anti-parallel
Strand 3
B
37 45anti-parallel
Strand 4
B
84 89anti-parallel
Strand 5
B
75 80anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
141 143anti-parallel
Strand 3
B
152 154anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
161 162anti-parallel
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