Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VZ8 entry

There is 1 chain in PDB entry 2VZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are155 helices in PDB entry 2VZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 28Right-handed alpha
Helix 2
2
A
43 47Right-handed 310
Helix 3
3
A
68 74Right-handed alpha
Helix 4
4
A
76 92Right-handed alpha
Helix 5
5
A
96 100Right-handed 310
Helix 6
6
A
114 121Right-handed alpha
Helix 7
7
A
129 135Right-handed 310
Helix 8
8
A
137 149Right-handed alpha
Helix 9
9
A
163 177Right-handed alpha
Helix 10
10
A
193 203Right-handed alpha
Helix 11
11
A
266 275Right-handed alpha
Helix 12
12
A
277 281Right-handed 310
Helix 13
13
A
299 313Right-handed alpha
Helix 14
14
A
325 330Right-handed alpha
Helix 15
15
A
332 334Right-handed 310
Helix 16
16
A
336 350Right-handed alpha
Helix 17
17
A
430 444Right-handed alpha
Helix 18
18
A
447 459Right-handed alpha
Helix 19
19
A
513 527Right-handed alpha
Helix 20
20
A
529 531Right-handed 310
Helix 21
21
A
533 540Right-handed alpha
Helix 22
22
A
542 547Right-handed alpha
Helix 23
23
A
549 570Right-handed alpha
Helix 24
24
A
582 591Right-handed alpha
Helix 25
25
A
595 613Right-handed alpha
Helix 26
26
A
626 634Right-handed alpha
Helix 27
27
A
655 668Right-handed alpha
Helix 28
28
A
685 688Right-handed 310
Helix 29
29
A
690 702Right-handed alpha
Helix 30
30
A
718 724Right-handed 310
Helix 31
31
A
731 741Right-handed alpha
Helix 32
32
A
745 751Right-handed alpha
Helix 33
33
A
767 774Right-handed alpha
Helix 34
34
A
791 807Right-handed alpha
Helix 35
35
A
812 815Right-handed 310
Helix 36
36
A
830 834Right-handed 310
Helix 37
37
A
871 876Right-handed 310
Helix 38
38
A
887 903Right-handed alpha
Helix 39
39
A
906 910Right-handed 310
Helix 40
40
A
966 970Right-handed 310
Helix 41
41
A
989 999Right-handed alpha
Helix 42
42
A
1005 1008Right-handed 310
Helix 43
43
A
1027 1041Right-handed alpha
Helix 44
44
A
1060 1068Right-handed alpha
Helix 45
45
A
1224 1236Right-handed alpha
Helix 46
46
A
1254 1264Right-handed alpha
Helix 47
47
A
1284 1292Right-handed alpha
Helix 48
48
A
1376 1385Right-handed alpha
Helix 49
49
A
1424 1432Right-handed alpha
Helix 50
50
A
1452 1461Right-handed alpha
Helix 51
51
A
1464 1468Right-handed 310
Helix 52
52
A
1491 1500Right-handed alpha
Helix 53
53
A
1549 1554Right-handed alpha
Helix 54
54
A
1557 1562Right-handed alpha
Helix 55
55
A
1572 1581Right-handed alpha
Helix 56
56
A
1584 1588Right-handed 310
Helix 57
57
A
1629 1631Right-handed 310
Helix 58
58
A
1641 1647Right-handed alpha
Helix 59
59
A
1649 1660Right-handed alpha
Helix 60
60
A
1678 1691Right-handed alpha
Helix 61
61
A
1701 1712Right-handed alpha
Helix 62
62
A
1716 1718Right-handed 310
Helix 63
63
A
1726 1735Right-handed alpha
Helix 64
64
A
1750 1759Right-handed alpha
Helix 65
65
A
1771 1776Right-handed alpha
Helix 66
66
A
1783 1787Right-handed 310
Helix 67
67
A
1795 1799Right-handed 310
Helix 68
68
A
1804 1820Right-handed alpha
Helix 69
69
A
1835 1845Right-handed alpha
Helix 70
70
A
1894 1907Right-handed alpha
Helix 71
71
A
1922 1935Right-handed alpha
Helix 72
72
A
1948 1962Right-handed alpha
Helix 73
73
A
1995 2009Right-handed alpha
Helix 74
74
A
2022 2026Right-handed alpha
Helix 75
75
A
2031 2051Right-handed alpha
Helix 76
76
A
2087 2100Right-handed alpha
Helix 77
77
B
19 28Right-handed alpha
Helix 78
78
B
43 47Right-handed 310
Helix 79
79
B
68 74Right-handed alpha
Helix 80
80
B
76 92Right-handed alpha
Helix 81
81
B
96 100Right-handed 310
Helix 82
82
B
114 121Right-handed alpha
Helix 83
83
B
129 135Right-handed 310
Helix 84
84
B
137 149Right-handed alpha
Helix 85
85
B
163 177Right-handed alpha
Helix 86
86
B
193 203Right-handed alpha
Helix 87
87
B
266 275Right-handed alpha
Helix 88
88
B
277 281Right-handed 310
Helix 89
89
B
299 313Right-handed alpha
Helix 90
90
B
325 330Right-handed alpha
Helix 91
91
B
332 334Right-handed 310
Helix 92
92
B
336 350Right-handed alpha
Helix 93
93
B
430 444Right-handed alpha
Helix 94
94
B
447 459Right-handed alpha
Helix 95
95
B
513 527Right-handed alpha
Helix 96
96
B
529 531Right-handed 310
Helix 97
97
B
533 540Right-handed alpha
Helix 98
98
B
542 547Right-handed alpha
Helix 99
99
B
549 570Right-handed alpha
Helix 100
100
B
582 591Right-handed alpha
Helix 101
101
B
595 613Right-handed alpha
Helix 102
102
B
626 634Right-handed alpha
Helix 103
103
B
655 668Right-handed alpha
Helix 104
104
B
685 688Right-handed 310
Helix 105
105
B
690 702Right-handed alpha
Helix 106
106
B
718 724Right-handed 310
Helix 107
107
B
731 741Right-handed alpha
Helix 108
108
B
745 751Right-handed alpha
Helix 109
109
B
767 774Right-handed alpha
Helix 110
110
B
791 807Right-handed alpha
Helix 111
111
B
812 815Right-handed 310
Helix 112
112
B
830 834Right-handed 310
Helix 113
113
B
871 876Right-handed 310
Helix 114
114
B
887 903Right-handed alpha
Helix 115
115
B
906 910Right-handed 310
Helix 116
116
B
966 970Right-handed 310
Helix 117
117
B
989 999Right-handed alpha
Helix 118
118
B
1005 1008Right-handed 310
Helix 119
119
B
1027 1041Right-handed alpha
Helix 120
120
B
1060 1068Right-handed alpha
Helix 121
121
B
1134 1143Right-handed alpha
Helix 122
122
B
1224 1236Right-handed alpha
Helix 123
123
B
1254 1264Right-handed alpha
Helix 124
124
B
1284 1292Right-handed alpha
Helix 125
125
B
1327 1336Right-handed alpha
Helix 126
126
B
1374 1385Right-handed alpha
Helix 127
127
B
1424 1432Right-handed alpha
Helix 128
128
B
1452 1461Right-handed alpha
Helix 129
129
B
1464 1468Right-handed 310
Helix 130
130
B
1491 1500Right-handed alpha
Helix 131
131
B
1549 1554Right-handed alpha
Helix 132
132
B
1557 1562Right-handed alpha
Helix 133
133
B
1572 1581Right-handed alpha
Helix 134
134
B
1584 1588Right-handed 310
Helix 135
135
B
1629 1631Right-handed 310
Helix 136
136
B
1641 1647Right-handed alpha
Helix 137
137
B
1649 1660Right-handed alpha
Helix 138
138
B
1678 1691Right-handed alpha
Helix 139
139
B
1701 1712Right-handed alpha
Helix 140
140
B
1716 1718Right-handed 310
Helix 141
141
B
1726 1735Right-handed alpha
Helix 142
142
B
1750 1759Right-handed alpha
Helix 143
143
B
1771 1776Right-handed alpha
Helix 144
144
B
1783 1787Right-handed 310
Helix 145
145
B
1795 1799Right-handed 310
Helix 146
146
B
1804 1820Right-handed alpha
Helix 147
147
B
1835 1845Right-handed alpha
Helix 148
148
B
1894 1907Right-handed alpha
Helix 149
149
B
1922 1935Right-handed alpha
Helix 150
150
B
1948 1962Right-handed alpha
Helix 151
151
B
1984 1993Right-handed alpha
Helix 152
152
B
1995 2009Right-handed alpha
Helix 153
153
B
2022 2026Right-handed alpha
Helix 154
154
B
2031 2051Right-handed alpha
Helix 155
155
B
2087 2100Right-handed alpha
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There are 33 sheets in PDB entry 2VZ8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO,

There are 22 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 377first strand
Strand 2
A
320 324parallel
Strand 3
A
288 292parallel
Strand 4
A
387 394parallel
Strand 5
A
398 406anti-parallel
Strand 6
A
244 253anti-parallel
Strand 7
A
4 13anti-parallel
Strand 8
A
224 235anti-parallel
Strand 9
A
181 190anti-parallel
Strand 10
A
105 111parallel
Strand 11
A
153 158parallel
Strand 12
B
153 158anti-parallel
Strand 13
B
105 111parallel
Strand 14
B
181 190parallel
Strand 15
B
224 235anti-parallel
Strand 16
B
4 13anti-parallel
Strand 17
B
244 253anti-parallel
Strand 18
B
398 406anti-parallel
Strand 19
B
387 394anti-parallel
Strand 20
B
288 292parallel
Strand 21
B
320 324parallel
Strand 22
B
374 377parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 35first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
224 235parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 428first strand
Strand 2
A
467 473anti-parallel
Strand 3
A
479 484anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 713first strand
Strand 2
A
576 579parallel
Strand 3
A
491 496parallel
Strand 4
A
756 761parallel
Strand 5
A
779 783parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 675first strand
Strand 2
A
618 624anti-parallel
Strand 3
A
648 654anti-parallel
Strand 4
A
639 645anti-parallel
Strand 5
A
743 744parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 707first strand
Strand 2
A
729 730anti-parallel
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There are 12 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 865first strand
Strand 2
A
930 938anti-parallel
Strand 3
A
943 949anti-parallel
Strand 4
A
952 961anti-parallel
Strand 5
A
911 920anti-parallel
Strand 6
A
1049 1060anti-parallel
Strand 7
A
1093 1103anti-parallel
Strand 8
A
1087 1091anti-parallel
Strand 9
A
1075 1083anti-parallel
Strand 10
A
1018 1024anti-parallel
Strand 11
A
1009 1014anti-parallel
Strand 12
A
986 988anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
923 925first strand
Strand 2
A
883 886anti-parallel
Strand 3
A
877 881anti-parallel
Strand 4
A
1000 1004anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1075 1083anti-parallel
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There are 13 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1413 1418first strand
Strand 2
A
1440 1445parallel
Strand 3
A
1471 1476parallel
Strand 4
A
1502 1507parallel
Strand 5
A
1510 1518anti-parallel
Strand 6
A
1115 1123anti-parallel
Strand 7
A
2104 2111anti-parallel
Strand 8
A
2055 2061parallel
Strand 9
A
2014 2021parallel
Strand 10
A
1965 1971parallel
Strand 11
A
1886 1891parallel
Strand 12
A
1910 1916parallel
Strand 13
A
1937 1943parallel
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There are 8 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1129first strand
Strand 2
A
1387 1395parallel
Strand 3
A
1399 1406anti-parallel
Strand 4
A
1342 1349anti-parallel
Strand 5
A
1313 1319parallel
Strand 6
A
1241 1247parallel
Strand 7
A
1269 1276parallel
Strand 8
A
1294 1298parallel
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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1525 1529first strand
Strand 2
A
1872 1876anti-parallel
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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1531 1535first strand
Strand 2
A
1544 1548anti-parallel
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There are 6 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1827 1832first strand
Strand 2
A
1850 1856parallel
Strand 3
A
1563 1571anti-parallel
Strand 4
A
1601 1608anti-parallel
Strand 5
A
1611 1617anti-parallel
Strand 6
A
1632 1635anti-parallel
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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1563 1571first strand
Strand 2
A
1624 1627anti-parallel
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There are 12 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1719 1722first strand
Strand 2
A
1694 1699parallel
Strand 3
A
1670 1675parallel
Strand 4
A
1742 1747parallel
Strand 5
A
1764 1769parallel
Strand 6
A
1789 1793parallel
Strand 7
B
1789 1793anti-parallel
Strand 8
B
1764 1769parallel
Strand 9
B
1742 1747parallel
Strand 10
B
1670 1675parallel
Strand 11
B
1694 1699parallel
Strand 12
B
1719 1722parallel
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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1778 1782first strand
Strand 2
B
1778 1782anti-parallel
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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2104 2111first strand
Strand 2
A
2083 2084anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
50 53anti-parallel
Strand 3
B
224 235parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 428first strand
Strand 2
B
467 473anti-parallel
Strand 3
B
479 484anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
711 713first strand
Strand 2
B
576 579parallel
Strand 3
B
491 496parallel
Strand 4
B
756 761parallel
Strand 5
B
779 783parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
671 675first strand
Strand 2
B
619 624anti-parallel
Strand 3
B
648 654anti-parallel
Strand 4
B
639 645anti-parallel
Strand 5
B
743 744parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
706 707first strand
Strand 2
B
729 730anti-parallel
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There are 12 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
858 865first strand
Strand 2
B
930 938anti-parallel
Strand 3
B
943 949anti-parallel
Strand 4
B
952 961anti-parallel
Strand 5
B
911 920anti-parallel
Strand 6
B
1049 1060anti-parallel
Strand 7
B
1093 1103anti-parallel
Strand 8
B
1087 1091anti-parallel
Strand 9
B
1075 1083anti-parallel
Strand 10
B
1018 1024anti-parallel
Strand 11
B
1009 1014anti-parallel
Strand 12
B
986 988anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
923 925first strand
Strand 2
B
883 886anti-parallel
Strand 3
B
877 881anti-parallel
Strand 4
B
1000 1004anti-parallel
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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1069 1071first strand
Strand 2
B
1075 1083anti-parallel
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There are 13 strands in BI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1413 1418first strand
Strand 2
B
1440 1445parallel
Strand 3
B
1471 1476parallel
Strand 4
B
1502 1507parallel
Strand 5
B
1510 1518anti-parallel
Strand 6
B
1115 1123anti-parallel
Strand 7
B
2104 2111anti-parallel
Strand 8
B
2055 2061parallel
Strand 9
B
2014 2021parallel
Strand 10
B
1965 1971parallel
Strand 11
B
1886 1891parallel
Strand 12
B
1910 1916parallel
Strand 13
B
1937 1943parallel
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There are 8 strands in BJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1125 1129first strand
Strand 2
B
1387 1395parallel
Strand 3
B
1399 1406anti-parallel
Strand 4
B
1342 1349anti-parallel
Strand 5
B
1313 1319parallel
Strand 6
B
1241 1247parallel
Strand 7
B
1269 1276parallel
Strand 8
B
1294 1298parallel
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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1525 1529first strand
Strand 2
B
1872 1876anti-parallel
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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1531 1535first strand
Strand 2
B
1544 1548anti-parallel
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There are 6 strands in BM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1827 1832first strand
Strand 2
B
1850 1856parallel
Strand 3
B
1563 1571anti-parallel
Strand 4
B
1601 1608anti-parallel
Strand 5
B
1611 1617anti-parallel
Strand 6
B
1632 1635anti-parallel
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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1563 1571first strand
Strand 2
B
1624 1627anti-parallel
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There are 2 strands in BO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2104 2111first strand
Strand 2
B
2083 2084anti-parallel
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