Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VZD entry

There are 4 chains in PDB entry 2VZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 246GLU 372
B
 ARG 247GLU 372
C
 ASP 2SER 13
D
 MET 1THR 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2VZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
248 257Right-handed alpha
Helix 2
2
A
260 277Right-handed alpha
Helix 3
3
A
278 280Right-handed 310
Helix 4
4
A
293 305Right-handed alpha
Helix 5
5
A
309 313Right-handed 310
Helix 6
6
A
319 338Right-handed alpha
Helix 7
7
A
345 351Right-handed alpha
Helix 8
8
A
353 369Right-handed alpha
Helix 9
9
B
248 257Right-handed alpha
Helix 10
10
B
260 277Right-handed alpha
Helix 11
11
B
278 280Right-handed 310
Helix 12
12
B
293 305Right-handed alpha
Helix 13
13
B
309 313Right-handed 310
Helix 14
14
B
319 337Right-handed alpha
Helix 15
15
B
345 351Right-handed alpha
Helix 16
16
B
353 369Right-handed alpha
Helix 17
17
C
2 12Right-handed alpha
Helix 18
18
D
1 12Right-handed alpha
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There are no sheets in PDB entry 2VZD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il