Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2VZV entry

There are 2 chains in PDB entry 2VZV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	ASP 899
B	LEU 42	ASP 899

There are 41 helices in PDB entry 2VZV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	63	65	Right-handed 310
Helix 2	2	A	67	71	Right-handed 310
Helix 3	3	A	90	97	Right-handed alpha
Helix 4	4	A	107	112	Right-handed 310
Helix 5	5	A	114	118	Right-handed 310
Helix 6	6	A	174	177	Right-handed 310
Helix 7	7	A	372	387	Right-handed alpha
Helix 8	8	A	399	410	Right-handed alpha
Helix 9	9	A	421	425	Right-handed 310
Helix 10	10	A	439	456	Right-handed alpha
Helix 11	11	A	473	488	Right-handed alpha
Helix 12	12	A	520	526	Right-handed 310
Helix 13	13	A	550	558	Right-handed alpha
Helix 14	14	A	559	569	Right-handed alpha
Helix 15	15	A	586	598	Right-handed alpha
Helix 16	16	A	602	628	Right-handed alpha
Helix 17	17	A	629	631	Right-handed 310
Helix 18	18	A	663	673	Right-handed alpha
Helix 19	19	A	776	779	Right-handed 310
Helix 20	20	A	792	798	Right-handed 310
Helix 21	21	A	875	878	Right-handed 310
Helix 22	22	B	63	65	Right-handed 310
Helix 23	23	B	67	71	Right-handed 310
Helix 24	24	B	90	97	Right-handed alpha
Helix 25	25	B	107	112	Right-handed 310
Helix 26	26	B	114	119	Right-handed 310
Helix 27	27	B	372	386	Right-handed alpha
Helix 28	28	B	399	410	Right-handed alpha
Helix 29	29	B	421	425	Right-handed 310
Helix 30	30	B	439	456	Right-handed alpha
Helix 31	31	B	473	487	Right-handed alpha
Helix 32	32	B	520	526	Right-handed 310
Helix 33	33	B	550	558	Right-handed alpha
Helix 34	34	B	559	569	Right-handed alpha
Helix 35	35	B	580	584	Right-handed 310
Helix 36	36	B	586	598	Right-handed alpha
Helix 37	37	B	602	629	Right-handed alpha
Helix 38	38	B	663	673	Right-handed alpha
Helix 39	39	B	776	779	Right-handed 310
Helix 40	40	B	792	798	Right-handed 310
Helix 41	41	B	875	878	Right-handed 310

There are 30 sheets in PDB entry 2VZV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	53	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	169	172	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	121	129	anti-parallel
Strand 4	A	180	188	anti-parallel
Strand 5	A	147	151	anti-parallel
Strand 6	A	154	157	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	214	215	anti-parallel
Strand 3	A	143	144	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	238	first strand
Strand 2	A	244	255	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	289	first strand
Strand 2	A	244	255	parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	244	255	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	280	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	312	320	anti-parallel
Strand 4	A	323	332	anti-parallel

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There are 3 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	347	351	anti-parallel
Strand 3	A	354	355	anti-parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	416	first strand
Strand 2	A	390	394	parallel
Strand 3	A	358	363	parallel
Strand 4	A	636	641	parallel
Strand 5	A	537	542	parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	493	494	parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	678	first strand
Strand 2	A	686	691	anti-parallel
Strand 3	A	729	735	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	713	724	first strand
Strand 2	A	697	708	anti-parallel
Strand 3	A	745	753	anti-parallel
Strand 4	A	759	768	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	773	774	first strand
Strand 2	A	786	788	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	811	first strand
Strand 2	A	816	825	anti-parallel
Strand 3	A	865	873	anti-parallel
Strand 4	A	852	853	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	858	860	first strand
Strand 2	A	833	841	anti-parallel
Strand 3	A	883	887	anti-parallel
Strand 4	A	893	897	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	219	224	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	169	172	anti-parallel

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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	56	61	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	180	188	anti-parallel
Strand 5	B	147	151	anti-parallel
Strand 6	B	154	157	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	89	first strand
Strand 2	B	214	215	anti-parallel
Strand 3	B	143	144	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	238	first strand
Strand 2	B	244	255	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	289	first strand
Strand 2	B	244	255	parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	296	first strand
Strand 2	B	244	255	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	280	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	312	320	anti-parallel
Strand 4	B	323	332	anti-parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	347	351	anti-parallel
Strand 3	B	354	356	anti-parallel

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There are 6 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	416	first strand
Strand 2	B	390	394	parallel
Strand 3	B	358	363	parallel
Strand 4	B	636	641	parallel
Strand 5	B	537	542	parallel
Strand 6	B	510	511	parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	493	494	parallel

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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	676	680	first strand
Strand 2	B	686	691	anti-parallel
Strand 3	B	729	735	anti-parallel

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There are 4 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	724	first strand
Strand 2	B	697	708	anti-parallel
Strand 3	B	745	753	anti-parallel
Strand 4	B	759	768	anti-parallel

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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	773	774	first strand
Strand 2	B	786	788	anti-parallel

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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	803	811	first strand
Strand 2	B	816	825	anti-parallel
Strand 3	B	865	873	anti-parallel
Strand 4	B	852	853	anti-parallel

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There are 4 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	858	860	first strand
Strand 2	B	833	841	anti-parallel
Strand 3	B	883	888	anti-parallel
Strand 4	B	892	897	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2VZV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZV