Analysis of interatomic Contacts of Structural Units in PDB entry:
2VZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2VZY entry

There are 4 chains in PDB entry 2VZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 212
B
 SER 2GLY 211
C
 SER 2GLY 211
D
 SER 2GLY 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 2VZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed 310
Helix 2
2
A
23 36Right-handed alpha
Helix 3
3
A
57 72Right-handed alpha
Helix 4
4
A
100 105Right-handed alpha
Helix 5
5
A
115 118Right-handed 310
Helix 6
6
A
121 137Right-handed alpha
Helix 7
7
A
151 161Right-handed alpha
Helix 8
8
A
187 194Right-handed alpha
Helix 9
9
A
203 205Right-handed 310
Helix 10
10
A
206 211Right-handed alpha
Helix 11
11
B
5 10Right-handed 310
Helix 12
12
B
23 35Right-handed alpha
Helix 13
13
B
57 72Right-handed alpha
Helix 14
14
B
100 105Right-handed alpha
Helix 15
15
B
115 118Right-handed 310
Helix 16
16
B
121 137Right-handed alpha
Helix 17
17
B
151 161Right-handed alpha
Helix 18
18
B
187 194Right-handed alpha
Helix 19
19
B
206 211Right-handed alpha
Helix 20
20
C
5 10Right-handed 310
Helix 21
21
C
23 35Right-handed alpha
Helix 22
22
C
57 72Right-handed alpha
Helix 23
23
C
100 105Right-handed alpha
Helix 24
24
C
115 118Right-handed 310
Helix 25
25
C
121 137Right-handed alpha
Helix 26
26
C
151 162Right-handed alpha
Helix 27
27
C
187 194Right-handed alpha
Helix 28
28
C
206 211Right-handed alpha
Helix 29
29
D
5 10Right-handed 310
Helix 30
30
D
23 36Right-handed alpha
Helix 31
31
D
57 72Right-handed alpha
Helix 32
32
D
100 105Right-handed alpha
Helix 33
33
D
115 118Right-handed 310
Helix 34
34
D
121 137Right-handed alpha
Helix 35
35
D
151 161Right-handed alpha
Helix 36
36
D
187 194Right-handed alpha
Helix 37
37
D
206 211Right-handed alpha
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There are 4 sheets in PDB entry 2VZY. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 173first strand
Strand 2
A
176 186anti-parallel
Strand 3
A
142 148anti-parallel
Strand 4
A
106 113parallel
Strand 5
A
89 99anti-parallel
Strand 6
A
77 86anti-parallel
Strand 7
A
17 20anti-parallel
Strand 8
A
11 13anti-parallel
Strand 9
A
199 201anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 173first strand
Strand 2
B
176 186anti-parallel
Strand 3
B
142 148anti-parallel
Strand 4
B
106 113parallel
Strand 5
B
89 99anti-parallel
Strand 6
B
77 86anti-parallel
Strand 7
B
18 20anti-parallel
Strand 8
B
11 13anti-parallel
Strand 9
B
199 201anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 173first strand
Strand 2
C
176 186anti-parallel
Strand 3
C
142 148anti-parallel
Strand 4
C
106 113parallel
Strand 5
C
89 99anti-parallel
Strand 6
C
77 86anti-parallel
Strand 7
C
17 20anti-parallel
Strand 8
C
11 13anti-parallel
Strand 9
C
199 201anti-parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 173first strand
Strand 2
D
176 186anti-parallel
Strand 3
D
142 148anti-parallel
Strand 4
D
106 113parallel
Strand 5
D
89 99anti-parallel
Strand 6
D
77 86anti-parallel
Strand 7
D
18 20anti-parallel
Strand 8
D
11 13anti-parallel
Strand 9
D
199 201anti-parallel
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