Analysis of interatomic Contacts of Structural Units in PDB entry:
2W08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W08 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 2W08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1VAL 204
B
 HIS 1VAL 204
C
 HIS 1VAL 204
D
 HIS 1VAL 204
E
 HIS 1VAL 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 2W08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
145 149Right-handed 310
Helix 2
2
A
165 175Right-handed alpha
Helix 3
3
B
145 149Right-handed 310
Helix 4
4
B
165 175Right-handed alpha
Helix 5
5
C
145 149Right-handed 310
Helix 6
6
C
165 174Right-handed alpha
Helix 7
7
D
145 149Right-handed 310
Helix 8
8
D
165 175Right-handed alpha
Helix 9
9
E
145 149Right-handed 310
Helix 10
10
E
165 174Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 2W08. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, EA, EB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
152 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
70 75anti-parallel
Strand 3
A
57 67anti-parallel
Strand 4
A
47 54anti-parallel
Strand 5
A
130 133anti-parallel
Strand 6
A
19 22anti-parallel
Strand 7
A
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
104 109anti-parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
152 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
104 109anti-parallel
Strand 3
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
70 75anti-parallel
Strand 3
B
57 67anti-parallel
Strand 4
B
47 54anti-parallel
Strand 5
B
130 133anti-parallel
Strand 6
B
19 23anti-parallel
Strand 7
B
189 193anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
104 109anti-parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
32 40anti-parallel
Strand 5
C
152 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
112 113first strand
Strand 2
C
104 109anti-parallel
Strand 3
C
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 83first strand
Strand 2
C
70 75anti-parallel
Strand 3
C
57 67anti-parallel
Strand 4
C
47 54anti-parallel
Strand 5
C
130 133anti-parallel
Strand 6
C
19 22anti-parallel
Strand 7
C
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 113first strand
Strand 2
D
104 109anti-parallel
Strand 3
D
117 118anti-parallel
Strand 4
D
104 109anti-parallel
Strand 5
D
183 184first strand
Strand 6
D
152 160anti-parallel
Strand 7
D
197 200first strand
Strand 8
D
7 11anti-parallel
Strand 9
D
152 160anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 83first strand
Strand 2
D
70 75anti-parallel
Strand 3
D
57 67anti-parallel
Strand 4
D
47 54anti-parallel
Strand 5
D
130 133anti-parallel
Strand 6
D
19 22anti-parallel
Strand 7
D
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 113first strand
Strand 2
E
104 109anti-parallel
Strand 3
E
117 118anti-parallel
Strand 4
E
104 109anti-parallel
Strand 5
E
183 184first strand
Strand 6
E
152 160anti-parallel
Strand 7
E
197 200first strand
Strand 8
E
7 11anti-parallel
Strand 9
E
152 160anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 83first strand
Strand 2
E
70 75anti-parallel
Strand 3
E
57 67anti-parallel
Strand 4
E
47 54anti-parallel
Strand 5
E
130 133anti-parallel
Strand 6
E
19 22anti-parallel
Strand 7
E
190 193anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il