Analysis of interatomic Contacts of Structural Units in PDB entry:
2W1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W1T entry

There are 2 chains in PDB entry 2W1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLU 177
B
 GLY 5GLU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 2W1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
50 55Right-handed alpha
Helix 3
3
A
56 71Right-handed alpha
Helix 4
4
A
89 94Right-handed alpha
Helix 5
5
A
99 108Right-handed alpha
Helix 6
6
A
158 176Right-handed alpha
Helix 7
7
B
19 26Right-handed alpha
Helix 8
8
B
58 71Right-handed alpha
Helix 9
9
B
89 94Right-handed alpha
Helix 10
10
B
99 108Right-handed alpha
Helix 11
11
B
158 176Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 2W1T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
44 48anti-parallel
Strand 4
A
44 48anti-parallel
Strand 5
A
33 38anti-parallel
Strand 6
B
6 9anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
B
15 17anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
143 152anti-parallel
Strand 4
A
132 140anti-parallel
Strand 5
A
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
127 128anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
73 77anti-parallel
Strand 3
B
143 152anti-parallel
Strand 4
B
132 140anti-parallel
Strand 5
B
112 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 121first strand
Strand 2
B
127 129anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il