Analysis of interatomic Contacts of Structural Units in PDB entry:
2W1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W1V entry

There are 2 chains in PDB entry 2W1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 39LYS 312
B
 MET 39LYS 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2W1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 72Right-handed alpha
Helix 2
2
A
91 96Right-handed alpha
Helix 3
3
A
101 115Right-handed alpha
Helix 4
4
A
167 169Right-handed 310
Helix 5
5
A
190 195Right-handed 310
Helix 6
6
A
196 206Right-handed alpha
Helix 7
7
A
220 238Right-handed alpha
Helix 8
8
A
286 296Right-handed alpha
Helix 9
9
A
297 301Right-handed 310
Helix 10
10
B
54 72Right-handed alpha
Helix 11
11
B
91 96Right-handed alpha
Helix 12
12
B
101 115Right-handed alpha
Helix 13
13
B
167 169Right-handed 310
Helix 14
14
B
190 195Right-handed 310
Helix 15
15
B
196 206Right-handed alpha
Helix 16
16
B
220 238Right-handed alpha
Helix 17
17
B
286 296Right-handed alpha
Helix 18
18
B
297 301Right-handed 310
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There are 9 sheets in PDB entry 2W1V. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
130 138anti-parallel
Strand 3
A
117 119anti-parallel
Strand 4
A
76 78parallel
Strand 5
A
41 48parallel
Strand 6
A
278 285anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
130 138anti-parallel
Strand 3
A
144 149anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
162 165anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
185 188anti-parallel
Strand 3
A
208 214parallel
Strand 4
A
240 244parallel
Strand 5
A
261 263anti-parallel
Strand 6
A
269 272anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 311first strand
Strand 2
B
307 311anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
130 138anti-parallel
Strand 3
B
117 120anti-parallel
Strand 4
B
76 79parallel
Strand 5
B
41 48parallel
Strand 6
B
278 285anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
130 138anti-parallel
Strand 3
B
144 149anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
162 165anti-parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
185 188anti-parallel
Strand 3
B
208 214parallel
Strand 4
B
240 244parallel
Strand 5
B
261 263anti-parallel
Strand 6
B
269 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il