Analysis of interatomic Contacts of Structural Units in PDB entry:
2W2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W2J entry

There is 1 chain in PDB entry 2W2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23GLN 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2W2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 40Right-handed 310
Helix 2
2
A
41 46Right-handed 310
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
63 67Right-handed 310
Helix 5
5
A
152 157Right-handed alpha
Helix 6
6
A
176 184Right-handed alpha
Helix 7
7
A
185 190Right-handed 310
Helix 8
8
A
202 207Right-handed 310
Helix 9
9
A
243 251Right-handed alpha
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There are 3 sheets in PDB entry 2W2J. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
130 131parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
286 287parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
163 172parallel
Strand 6
A
138 146anti-parallel
Strand 7
A
110 119anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
286 287parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
163 172parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il