Analysis of interatomic Contacts of Structural Units in PDB entry:
2W2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W2M entry

There are 3 chains in PDB entry 2W2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 153SER 447
E
 ASN 285ASP 333
P
 THR 61GLN 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2W2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
155 162Right-handed alpha
Helix 2
2
A
224 236Right-handed alpha
Helix 3
3
A
261 278Right-handed alpha
Helix 4
4
A
294 307Right-handed alpha
Helix 5
5
A
384 403Right-handed alpha
Helix 6
6
A
407 419Right-handed alpha
Helix 7
7
A
425 429Right-handed 310
Helix 8
8
A
430 434Right-handed 310
Helix 9
9
E
295 299Right-handed 310
Helix 10
10
E
299 304Right-handed 310
Helix 11
11
P
69 71Right-handed 310
Helix 12
12
P
87 105Right-handed alpha
Helix 13
13
P
127 129Right-handed 310
Helix 14
14
P
130 136Right-handed alpha
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There are 6 sheets in PDB entry 2W2M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, EA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 206first strand
Strand 2
A
246 251parallel
Strand 3
A
181 186parallel
Strand 4
A
283 287parallel
Strand 5
A
310 314parallel
Strand 6
A
334 339parallel
Strand 7
A
361 364parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
P
140 151anti-parallel
Strand 3
A
289 292anti-parallel
Strand 4
A
325 326anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
P
140 151anti-parallel
Strand 3
P
63 65parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
378 382anti-parallel
Strand 3
E
307 309anti-parallel
Strand 4
E
316 318anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
440 441anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
324 326first strand
Strand 2
E
330 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il