Analysis of interatomic Contacts of Structural Units in PDB entry:
2W59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2W59 entry

There are 2 chains in PDB entry 2W59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 349	ALA 566
B	PRO 349	ALA 566

There are 10 helices in PDB entry 2W59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	358	364	Right-handed alpha
Helix 2	AA2	A	419	425	Right-handed alpha
Helix 3	AA3	A	464	470	Right-handed 310
Helix 4	AA4	A	499	503	Right-handed 310
Helix 5	AA5	A	535	540	Right-handed alpha
Helix 6	AA6	B	358	364	Right-handed alpha
Helix 7	AA7	B	419	425	Right-handed alpha
Helix 8	AA8	B	464	468	Right-handed 310
Helix 9	AA9	B	499	503	Right-handed 310
Helix 10	AB1	B	535	540	Right-handed alpha

There are 10 sheets in PDB entry 2W59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	369	377	anti-parallel
Strand 3	A	410	417	anti-parallel
Strand 4	A	401	404	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	388	first strand
Strand 2	A	429	434	anti-parallel
Strand 3	A	442	446	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	461	first strand
Strand 2	A	472	482	anti-parallel
Strand 3	A	525	534	anti-parallel
Strand 4	A	504	505	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	461	first strand
Strand 2	A	472	482	anti-parallel
Strand 3	A	525	534	anti-parallel
Strand 4	A	509	510	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	488	493	anti-parallel
Strand 3	A	544	549	anti-parallel
Strand 4	A	557	562	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	355	first strand
Strand 2	B	369	377	anti-parallel
Strand 3	B	410	417	anti-parallel
Strand 4	B	401	404	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	389	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	442	446	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	461	first strand
Strand 2	B	472	482	anti-parallel
Strand 3	B	525	534	anti-parallel
Strand 4	B	504	505	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	461	first strand
Strand 2	B	472	482	anti-parallel
Strand 3	B	525	534	anti-parallel
Strand 4	B	509	510	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	497	first strand
Strand 2	B	488	493	anti-parallel
Strand 3	B	544	549	anti-parallel
Strand 4	B	557	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2W59

Analysis of interatomic Contacts of Structural Units in PDB entry:
2W59