Analysis of interatomic Contacts of Structural Units in PDB entry:
2W5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W5F entry

There are 2 chains in PDB entry 2W5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 32ALA 551
B
 ALA 32ALA 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2W5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 68Right-handed 310
Helix 2
2
A
194 199Right-handed alpha
Helix 3
3
A
212 215Right-handed 310
Helix 4
4
A
216 227Right-handed alpha
Helix 5
5
A
237 241Right-handed alpha
Helix 6
6
A
259 269Right-handed alpha
Helix 7
7
A
285 289Right-handed 310
Helix 8
8
A
301 324Right-handed alpha
Helix 9
9
A
342 349Right-handed alpha
Helix 10
10
A
362 369Right-handed alpha
Helix 11
11
A
372 385Right-handed alpha
Helix 12
12
A
400 417Right-handed alpha
Helix 13
13
A
438 451Right-handed alpha
Helix 14
14
A
471 493Right-handed alpha
Helix 15
15
A
514 518Right-handed 310
Helix 16
16
A
529 536Right-handed alpha
Helix 17
17
A
540 544Right-handed 310
Helix 18
18
B
64 68Right-handed 310
Helix 19
19
B
194 199Right-handed alpha
Helix 20
20
B
216 227Right-handed alpha
Helix 21
21
B
237 241Right-handed alpha
Helix 22
22
B
259 269Right-handed alpha
Helix 23
23
B
285 289Right-handed 310
Helix 24
24
B
301 324Right-handed alpha
Helix 25
25
B
342 349Right-handed alpha
Helix 26
26
B
362 369Right-handed alpha
Helix 27
27
B
372 385Right-handed alpha
Helix 28
28
B
400 417Right-handed alpha
Helix 29
29
B
438 453Right-handed alpha
Helix 30
30
B
471 493Right-handed alpha
Helix 31
31
B
514 518Right-handed 310
Helix 32
32
B
529 537Right-handed alpha
Helix 33
33
B
540 544Right-handed 310
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There are 12 sheets in PDB entry 2W5F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
170 179parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
70 74anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
96 104anti-parallel
Strand 5
A
143 150anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
70 74anti-parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
34 39parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
155 164anti-parallel
Strand 4
A
110 121anti-parallel
Strand 5
A
127 138anti-parallel
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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 209first strand
Strand 2
A
498 503parallel
Strand 3
A
455 464parallel
Strand 4
A
422 425parallel
Strand 5
A
390 395parallel
Strand 6
A
329 336parallel
Strand 7
A
272 279parallel
Strand 8
A
229 232parallel
Strand 9
A
204 209first strand
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 248first strand
Strand 2
A
251 254anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 39first strand
Strand 2
B
170 179parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
170 179anti-parallel
Strand 4
B
96 104anti-parallel
Strand 5
B
143 150anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
170 179anti-parallel
Strand 4
B
34 39parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
82 86anti-parallel
Strand 3
B
155 164anti-parallel
Strand 4
B
111 121anti-parallel
Strand 5
B
127 137anti-parallel
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There are 9 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
498 503parallel
Strand 3
B
455 464parallel
Strand 4
B
422 425parallel
Strand 5
B
390 395parallel
Strand 6
B
329 336parallel
Strand 7
B
272 279parallel
Strand 8
B
229 232parallel
Strand 9
B
204 209first strand
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 248first strand
Strand 2
B
251 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il