Analysis of interatomic Contacts of Structural Units in PDB entry:
2W5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W5T entry

There is 1 chain in PDB entry 2W5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 218LYS 641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 2W5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
218 229Right-handed alpha
Helix 2
2
A
258 262Right-handed 310
Helix 3
3
A
272 280Right-handed alpha
Helix 4
4
A
299 310Right-handed alpha
Helix 5
5
A
318 323Right-handed alpha
Helix 6
6
A
330 340Right-handed alpha
Helix 7
7
A
352 354Right-handed 310
Helix 8
8
A
355 364Right-handed alpha
Helix 9
9
A
370 374Right-handed 310
Helix 10
10
A
377 379Right-handed 310
Helix 11
11
A
387 401Right-handed alpha
Helix 12
12
A
422 426Right-handed 310
Helix 13
13
A
435 463Right-handed alpha
Helix 14
14
A
480 482Right-handed 310
Helix 15
15
A
483 492Right-handed alpha
Helix 16
16
A
496 503Right-handed alpha
Helix 17
17
A
528 538Right-handed alpha
Helix 18
18
A
594 616Right-handed alpha
Helix 19
19
A
617 621Right-handed 310
Helix 20
20
A
630 634Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 2W5T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 369first strand
Strand 2
A
342 347parallel
Strand 3
A
406 411parallel
Strand 4
A
249 254parallel
Strand 5
A
469 474parallel
Strand 6
A
508 511anti-parallel
Strand 7
A
285 288anti-parallel
Strand 8
A
518 519parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
269 270anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
524 525parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
385 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 561first strand
Strand 2
A
567 569anti-parallel
Strand 3
A
572 575anti-parallel
Strand 4
A
578 581anti-parallel
Strand 5
A
587 588anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il