Analysis of interatomic Contacts of Structural Units in PDB entry:
2W79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W79 entry

There are 2 chains in PDB entry 2W79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 241
B
 MET 1ARG 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2W79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
31 42Right-handed alpha
Helix 3
3
A
52 58Right-handed alpha
Helix 4
4
A
62 70Right-handed alpha
Helix 5
5
A
71 74Right-handed 310
Helix 6
6
A
84 94Right-handed alpha
Helix 7
7
A
102 108Right-handed alpha
Helix 8
8
A
110 118Right-handed alpha
Helix 9
9
A
140 144Right-handed 310
Helix 10
10
A
145 155Right-handed alpha
Helix 11
11
A
167 169Right-handed 310
Helix 12
12
A
176 188Right-handed alpha
Helix 13
13
A
199 213Right-handed alpha
Helix 14
14
A
223 228Right-handed alpha
Helix 15
15
A
232 240Right-handed alpha
Helix 16
16
B
19 23Right-handed 310
Helix 17
17
B
31 42Right-handed alpha
Helix 18
18
B
52 58Right-handed alpha
Helix 19
19
B
62 70Right-handed alpha
Helix 20
20
B
71 74Right-handed 310
Helix 21
21
B
84 94Right-handed alpha
Helix 22
22
B
102 108Right-handed alpha
Helix 23
23
B
110 118Right-handed alpha
Helix 24
24
B
145 155Right-handed alpha
Helix 25
25
B
167 169Right-handed 310
Helix 26
26
B
176 188Right-handed alpha
Helix 27
27
B
199 213Right-handed alpha
Helix 28
28
B
223 228Right-handed alpha
Helix 29
29
B
232 241Right-handed alpha
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There are 4 sheets in PDB entry 2W79. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
217 222parallel
Strand 5
A
190 194parallel
Strand 6
A
160 165parallel
Strand 7
A
121 129parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
47 51parallel
Strand 5
A
76 79parallel
Strand 6
A
98 101parallel
Strand 7
A
121 129parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
13 17anti-parallel
Strand 3
B
2 10anti-parallel
Strand 4
B
217 222parallel
Strand 5
B
190 194parallel
Strand 6
B
160 165parallel
Strand 7
B
121 129parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
13 17anti-parallel
Strand 3
B
2 10anti-parallel
Strand 4
B
47 51parallel
Strand 5
B
76 79parallel
Strand 6
B
98 101parallel
Strand 7
B
121 129parallel
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