Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W8D entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 2W8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 216LYS 296
A
 SER 298HIS 635
B
 ALA 215LYS 296
B
 SER 298HIS 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 2W8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
218 231Right-handed alpha
Helix 2
2
A
256 260Right-handed 310
Helix 3
3
A
270 279Right-handed alpha
Helix 4
4
A
295 307Right-handed alpha
Helix 5
5
A
315 320Right-handed alpha
Helix 6
6
A
327 332Right-handed alpha
Helix 7
7
A
333 336Right-handed 310
Helix 8
8
A
348 350Right-handed 310
Helix 9
9
A
351 359Right-handed alpha
Helix 10
10
A
366 370Right-handed 310
Helix 11
11
A
373 376Right-handed 310
Helix 12
12
A
383 397Right-handed alpha
Helix 13
13
A
431 458Right-handed alpha
Helix 14
14
A
476 478Right-handed 310
Helix 15
15
A
479 487Right-handed alpha
Helix 16
16
A
493 500Right-handed alpha
Helix 17
17
A
525 534Right-handed alpha
Helix 18
18
A
586 590Right-handed 310
Helix 19
19
A
592 611Right-handed alpha
Helix 20
20
A
612 617Right-handed 310
Helix 21
21
A
626 630Right-handed 310
Helix 22
22
B
216 218Right-handed 310
Helix 23
23
B
219 230Right-handed alpha
Helix 24
24
B
256 260Right-handed 310
Helix 25
25
B
270 279Right-handed alpha
Helix 26
26
B
295 307Right-handed alpha
Helix 27
27
B
315 320Right-handed alpha
Helix 28
28
B
327 332Right-handed alpha
Helix 29
29
B
333 336Right-handed 310
Helix 30
30
B
348 350Right-handed 310
Helix 31
31
B
351 360Right-handed alpha
Helix 32
32
B
366 370Right-handed 310
Helix 33
33
B
383 397Right-handed alpha
Helix 34
34
B
431 458Right-handed alpha
Helix 35
35
B
460 462Right-handed 310
Helix 36
36
B
476 478Right-handed 310
Helix 37
37
B
479 487Right-handed alpha
Helix 38
38
B
493 500Right-handed alpha
Helix 39
39
B
525 534Right-handed alpha
Helix 40
40
B
592 612Right-handed alpha
Helix 41
41
B
613 617Right-handed 310
Helix 42
42
B
626 630Right-handed 310
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There are 8 sheets in PDB entry 2W8D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 365first strand
Strand 2
A
338 343parallel
Strand 3
A
402 407parallel
Strand 4
A
246 252parallel
Strand 5
A
464 470parallel
Strand 6
A
505 509anti-parallel
Strand 7
A
283 285anti-parallel
Strand 8
A
516 517parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
267 268anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
521 522parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
564 565anti-parallel
Strand 3
A
569 572anti-parallel
Strand 4
A
575 578anti-parallel
Strand 5
A
584 585anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 365first strand
Strand 2
B
338 343parallel
Strand 3
B
402 407parallel
Strand 4
B
246 252parallel
Strand 5
B
464 470parallel
Strand 6
B
505 509anti-parallel
Strand 7
B
283 285anti-parallel
Strand 8
B
516 517first strand
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
267 268anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 289first strand
Strand 2
B
521 522parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
557 558first strand
Strand 2
B
564 565anti-parallel
Strand 3
B
569 572anti-parallel
Strand 4
B
575 578anti-parallel
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