Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2W8H entry

There are 5 chains in PDB entry 2W8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 24	ALA 345
B	ILE 24	ALA 345
C	ILE 24	ALA 345
D	ILE 24	ALA 345
E	ILE 24	VAL 37

There are 88 helices in PDB entry 2W8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	48	Right-handed 310
Helix 2	2	A	56	64	Right-handed alpha
Helix 3	3	A	73	82	Right-handed alpha
Helix 4	4	A	100	105	Right-handed alpha
Helix 5	5	A	140	153	Right-handed alpha
Helix 6	6	A	193	201	Right-handed alpha
Helix 7	7	A	225	231	Right-handed alpha
Helix 8	8	A	235	238	Right-handed 310
Helix 9	9	A	252	254	Right-handed 310
Helix 10	10	A	277	285	Right-handed alpha
Helix 11	11	A	324	332	Right-handed 310
Helix 12	12	B	45	48	Right-handed 310
Helix 13	13	B	56	64	Right-handed alpha
Helix 14	14	B	73	82	Right-handed alpha
Helix 15	15	B	100	105	Right-handed alpha
Helix 16	16	B	140	153	Right-handed alpha
Helix 17	17	B	193	201	Right-handed alpha
Helix 18	18	B	225	231	Right-handed alpha
Helix 19	19	B	235	238	Right-handed 310
Helix 20	20	B	252	254	Right-handed 310
Helix 21	21	B	277	285	Right-handed alpha
Helix 22	22	B	324	332	Right-handed 310
Helix 23	23	C	45	48	Right-handed 310
Helix 24	24	C	56	64	Right-handed alpha
Helix 25	25	C	73	82	Right-handed alpha
Helix 26	26	C	100	105	Right-handed alpha
Helix 27	27	C	140	153	Right-handed alpha
Helix 28	28	C	193	201	Right-handed alpha
Helix 29	29	C	225	231	Right-handed alpha
Helix 30	30	C	235	238	Right-handed 310
Helix 31	31	C	252	254	Right-handed 310
Helix 32	32	C	277	285	Right-handed alpha
Helix 33	33	C	324	332	Right-handed 310
Helix 34	34	D	45	48	Right-handed 310
Helix 35	35	D	56	64	Right-handed alpha
Helix 36	36	D	73	82	Right-handed alpha
Helix 37	37	D	100	105	Right-handed alpha
Helix 38	38	D	140	153	Right-handed alpha
Helix 39	39	D	193	201	Right-handed alpha
Helix 40	40	D	225	231	Right-handed alpha
Helix 41	41	D	235	238	Right-handed 310
Helix 42	42	D	252	254	Right-handed 310
Helix 43	43	D	277	285	Right-handed alpha
Helix 44	44	D	324	332	Right-handed 310
Helix 45	45	E	45	48	Right-handed 310
Helix 46	46	E	56	64	Right-handed alpha
Helix 47	47	E	73	82	Right-handed alpha
Helix 48	48	E	100	105	Right-handed alpha
Helix 49	49	E	140	153	Right-handed alpha
Helix 50	50	E	193	201	Right-handed alpha
Helix 51	51	E	225	231	Right-handed alpha
Helix 52	52	E	235	238	Right-handed 310
Helix 53	53	E	252	254	Right-handed 310
Helix 54	54	E	277	285	Right-handed alpha
Helix 55	55	E	324	332	Right-handed 310
Helix 56	56	F	45	48	Right-handed 310
Helix 57	57	F	56	64	Right-handed alpha
Helix 58	58	F	73	82	Right-handed alpha
Helix 59	59	F	100	105	Right-handed alpha
Helix 60	60	F	140	153	Right-handed alpha
Helix 61	61	F	193	201	Right-handed alpha
Helix 62	62	F	225	231	Right-handed alpha
Helix 63	63	F	235	238	Right-handed 310
Helix 64	64	F	252	254	Right-handed 310
Helix 65	65	F	277	285	Right-handed alpha
Helix 66	66	F	324	332	Right-handed 310
Helix 67	67	G	45	48	Right-handed 310
Helix 68	68	G	56	64	Right-handed alpha
Helix 69	69	G	73	82	Right-handed alpha
Helix 70	70	G	100	105	Right-handed alpha
Helix 71	71	G	140	153	Right-handed alpha
Helix 72	72	G	193	201	Right-handed alpha
Helix 73	73	G	225	231	Right-handed alpha
Helix 74	74	G	235	238	Right-handed 310
Helix 75	75	G	252	254	Right-handed 310
Helix 76	76	G	277	285	Right-handed alpha
Helix 77	77	G	324	332	Right-handed 310
Helix 78	78	H	45	48	Right-handed 310
Helix 79	79	H	56	64	Right-handed alpha
Helix 80	80	H	73	82	Right-handed alpha
Helix 81	81	H	100	105	Right-handed alpha
Helix 82	82	H	140	153	Right-handed alpha
Helix 83	83	H	193	201	Right-handed alpha
Helix 84	84	H	225	231	Right-handed alpha
Helix 85	85	H	235	238	Right-handed 310
Helix 86	86	H	252	254	Right-handed 310
Helix 87	87	H	277	285	Right-handed alpha
Helix 88	88	H	324	332	Right-handed 310

There are 32 sheets in PDB entry 2W8H. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, FA, FB, FC, FD, GA, GB, GC, GD, HA, HB, HC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	C	50	54	parallel
Strand 3	C	313	318	parallel
Strand 4	C	293	303	anti-parallel
Strand 5	C	338	344	anti-parallel
Strand 6	C	256	261	parallel
Strand 7	C	267	270	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	270	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	338	344	parallel
Strand 4	A	293	303	anti-parallel
Strand 5	A	313	318	anti-parallel
Strand 6	A	50	54	parallel
Strand 7	G	35	36	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	161	167	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	128	first strand
Strand 2	A	132	135	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	186	first strand
Strand 2	A	172	177	anti-parallel
Strand 3	A	246	249	parallel
Strand 4	A	213	216	anti-parallel
Strand 5	A	223	224	anti-parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	F	50	54	parallel
Strand 3	F	313	318	parallel
Strand 4	F	293	303	anti-parallel
Strand 5	F	338	344	anti-parallel
Strand 6	F	256	261	parallel
Strand 7	F	267	270	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	270	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	338	344	parallel
Strand 4	B	293	303	anti-parallel
Strand 5	B	313	318	anti-parallel
Strand 6	B	50	54	parallel
Strand 7	E	35	36	parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	161	167	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	132	135	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	186	first strand
Strand 2	B	172	177	anti-parallel
Strand 3	B	246	249	parallel
Strand 4	B	213	216	anti-parallel
Strand 5	B	223	224	anti-parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	36	first strand
Strand 2	D	50	54	parallel
Strand 3	D	313	318	parallel
Strand 4	D	293	303	anti-parallel
Strand 5	D	338	344	anti-parallel
Strand 6	D	256	261	parallel
Strand 7	D	267	270	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	161	167	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	128	first strand
Strand 2	C	132	135	anti-parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	186	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	246	249	parallel
Strand 4	C	213	216	anti-parallel
Strand 5	C	223	224	anti-parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	E	50	54	parallel
Strand 3	E	313	318	parallel
Strand 4	E	293	303	anti-parallel
Strand 5	E	338	344	anti-parallel
Strand 6	E	256	261	parallel
Strand 7	E	267	270	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	92	97	anti-parallel
Strand 3	D	161	167	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	132	135	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	186	first strand
Strand 2	D	172	177	anti-parallel
Strand 3	D	246	249	parallel
Strand 4	D	213	216	anti-parallel
Strand 5	D	223	224	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	E	92	97	anti-parallel
Strand 3	E	161	167	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	128	first strand
Strand 2	E	132	135	anti-parallel

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There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	186	first strand
Strand 2	E	172	177	anti-parallel
Strand 3	E	246	249	parallel
Strand 4	E	213	216	anti-parallel
Strand 5	E	223	224	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	H	50	54	parallel
Strand 3	H	313	318	parallel
Strand 4	H	293	303	anti-parallel
Strand 5	H	338	344	anti-parallel
Strand 6	H	256	261	parallel
Strand 7	H	267	270	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	92	97	anti-parallel
Strand 3	F	161	167	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	128	first strand
Strand 2	F	132	135	anti-parallel

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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	186	first strand
Strand 2	F	172	177	anti-parallel
Strand 3	F	246	249	parallel
Strand 4	F	213	216	anti-parallel
Strand 5	F	223	224	anti-parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	270	first strand
Strand 2	G	256	261	anti-parallel
Strand 3	G	338	344	parallel
Strand 4	G	293	303	anti-parallel
Strand 5	G	313	318	anti-parallel
Strand 6	G	50	54	parallel
Strand 7	H	35	36	parallel

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There are 3 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	119	first strand
Strand 2	G	92	97	anti-parallel
Strand 3	G	161	167	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	128	first strand
Strand 2	G	132	135	anti-parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	186	first strand
Strand 2	G	172	177	anti-parallel
Strand 3	G	246	249	parallel
Strand 4	G	213	216	anti-parallel
Strand 5	G	223	224	anti-parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	92	97	anti-parallel
Strand 3	H	161	167	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	128	first strand
Strand 2	H	132	135	anti-parallel

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There are 5 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	186	first strand
Strand 2	H	172	177	anti-parallel
Strand 3	H	246	249	parallel
Strand 4	H	213	216	anti-parallel
Strand 5	H	223	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2W8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8H