Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W8M entry

There are 2 chains in PDB entry 2W8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 19LEU 207
B
 ASP 17LYS 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2W8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 45Right-handed alpha
Helix 2
2
A
71 75Right-handed 310
Helix 3
3
A
121 130Right-handed alpha
Helix 4
4
A
153 162Right-handed alpha
Helix 5
5
A
184 186Right-handed 310
Helix 6
6
A
189 207Right-handed alpha
Helix 7
7
B
22 45Right-handed alpha
Helix 8
8
B
71 75Right-handed 310
Helix 9
9
B
107 113Right-handed alpha
Helix 10
10
B
121 130Right-handed alpha
Helix 11
11
B
153 162Right-handed alpha
Helix 12
12
B
184 186Right-handed 310
Helix 13
13
B
189 204Right-handed alpha
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There are 4 sheets in PDB entry 2W8M. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 85first strand
Strand 2
A
90 98anti-parallel
Strand 3
A
136 142parallel
Strand 4
A
147 152anti-parallel
Strand 5
A
187 188anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
178 182anti-parallel
Strand 3
A
167 168anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
89 98anti-parallel
Strand 4
B
136 142parallel
Strand 5
B
147 152anti-parallel
Strand 6
B
187 188anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
177 182anti-parallel
Strand 3
B
166 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il