Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W8O entry

There is 1 chain in PDB entry 2W8O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 51LEU 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2W8O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 113Right-handed alpha
Helix 2
2
A
116 133Right-handed alpha
Helix 3
3
A
134 147Right-handed alpha
Helix 4
4
A
149 171Right-handed alpha
Helix 5
5
A
208 221Right-handed alpha
Helix 6
6
A
234 248Right-handed alpha
Helix 7
7
A
260 274Right-handed alpha
Helix 8
8
A
285 298Right-handed alpha
Helix 9
9
A
320 333Right-handed alpha
Helix 10
10
A
334 337Right-handed 310
Helix 11
11
A
350 368Right-handed alpha
Helix 12
12
A
385 401Right-handed alpha
Helix 13
13
A
451 460Right-handed alpha
Helix 14
14
A
474 485Right-handed alpha
Helix 15
15
A
507 509Right-handed 310
Helix 16
16
A
520 523Right-handed 310
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There are 5 sheets in PDB entry 2W8O. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
68 69anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
86 91anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 194first strand
Strand 2
A
525 532anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
224 228parallel
Strand 3
A
197 201parallel
Strand 4
A
277 284parallel
Strand 5
A
302 307parallel
Strand 6
A
511 512anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
443 449parallel
Strand 3
A
346 349parallel
Strand 4
A
313 315parallel
Strand 5
A
467 471parallel
Strand 6
A
489 492parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il