Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W8R entry

There is 1 chain in PDB entry 2W8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 51LEU 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2W8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 113Right-handed alpha
Helix 2
2
A
116 134Right-handed alpha
Helix 3
3
A
134 146Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
156 171Right-handed alpha
Helix 6
6
A
172 174Right-handed 310
Helix 7
7
A
208 213Right-handed alpha
Helix 8
8
A
234 247Right-handed alpha
Helix 9
9
A
260 267Right-handed alpha
Helix 10
10
A
290 298Right-handed alpha
Helix 11
11
A
320 326Right-handed alpha
Helix 12
12
A
328 334Right-handed alpha
Helix 13
13
A
352 368Right-handed alpha
Helix 14
14
A
385 401Right-handed alpha
Helix 15
15
A
429 434Right-handed 310
Helix 16
16
A
451 460Right-handed alpha
Helix 17
17
A
474 485Right-handed alpha
Helix 18
18
A
521 523Right-handed 310
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There are 5 sheets in PDB entry 2W8R. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
69 70anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
90 91anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
525 532anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
225 228parallel
Strand 3
A
198 201parallel
Strand 4
A
279 282parallel
Strand 5
A
302 305parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 412first strand
Strand 2
A
420 426anti-parallel
Strand 3
A
443 449parallel
Strand 4
A
346 349parallel
Strand 5
A
313 315parallel
Strand 6
A
470 471parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il