Analysis of interatomic Contacts of Structural Units in PDB entry:
2W8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W8S entry

There are 8 chains in PDB entry 2W8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3PRO 56
A
 GLY 58HIS 514
B
 THR 2PRO 56
B
 GLY 58HIS 514
C
 THR 2PRO 56
C
 GLY 58HIS 514
D
 THR 2PRO 56
D
 GLY 58HIS 514
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 2W8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 26Right-handed alpha
Helix 2
2
A
34 44Right-handed alpha
Helix 3
3
A
57 67Right-handed alpha
Helix 4
4
A
69 74Right-handed alpha
Helix 5
5
A
88 96Right-handed alpha
Helix 6
6
A
111 115Right-handed 310
Helix 7
7
A
119 124Right-handed 310
Helix 8
8
A
139 141Right-handed 310
Helix 9
9
A
142 152Right-handed alpha
Helix 10
10
A
159 165Right-handed 310
Helix 11
11
A
183 186Right-handed 310
Helix 12
12
A
187 204Right-handed alpha
Helix 13
13
A
232 236Right-handed 310
Helix 14
14
A
244 250Right-handed alpha
Helix 15
15
A
252 260Right-handed alpha
Helix 16
16
A
264 267Right-handed 310
Helix 17
17
A
275 278Right-handed 310
Helix 18
18
A
279 311Right-handed alpha
Helix 19
19
A
313 315Right-handed 310
Helix 20
20
A
330 334Right-handed 310
Helix 21
21
A
341 345Right-handed alpha
Helix 22
22
A
372 381Right-handed alpha
Helix 23
23
A
394 399Right-handed alpha
Helix 24
24
A
423 429Right-handed alpha
Helix 25
25
A
431 434Right-handed 310
Helix 26
26
A
473 475Right-handed 310
Helix 27
27
A
476 494Right-handed alpha
Helix 28
28
B
19 27Right-handed alpha
Helix 29
29
B
34 44Right-handed alpha
Helix 30
30
B
57 67Right-handed alpha
Helix 31
31
B
69 74Right-handed alpha
Helix 32
32
B
88 96Right-handed alpha
Helix 33
33
B
111 115Right-handed 310
Helix 34
34
B
119 124Right-handed 310
Helix 35
35
B
139 141Right-handed 310
Helix 36
36
B
142 152Right-handed alpha
Helix 37
37
B
159 165Right-handed 310
Helix 38
38
B
183 186Right-handed 310
Helix 39
39
B
187 204Right-handed alpha
Helix 40
40
B
232 236Right-handed 310
Helix 41
41
B
244 250Right-handed alpha
Helix 42
42
B
252 262Right-handed alpha
Helix 43
43
B
264 267Right-handed 310
Helix 44
44
B
275 278Right-handed 310
Helix 45
45
B
279 311Right-handed alpha
Helix 46
46
B
313 315Right-handed 310
Helix 47
47
B
330 334Right-handed 310
Helix 48
48
B
341 344Right-handed 310
Helix 49
49
B
372 381Right-handed alpha
Helix 50
50
B
394 399Right-handed alpha
Helix 51
51
B
423 429Right-handed alpha
Helix 52
52
B
431 434Right-handed 310
Helix 53
53
B
473 475Right-handed 310
Helix 54
54
B
476 494Right-handed alpha
Helix 55
55
C
19 27Right-handed alpha
Helix 56
56
C
34 44Right-handed alpha
Helix 57
57
C
57 67Right-handed alpha
Helix 58
58
C
69 74Right-handed alpha
Helix 59
59
C
88 95Right-handed alpha
Helix 60
60
C
111 115Right-handed 310
Helix 61
61
C
119 124Right-handed 310
Helix 62
62
C
139 141Right-handed 310
Helix 63
63
C
142 152Right-handed alpha
Helix 64
64
C
159 165Right-handed 310
Helix 65
65
C
183 186Right-handed 310
Helix 66
66
C
187 204Right-handed alpha
Helix 67
67
C
232 236Right-handed 310
Helix 68
68
C
244 250Right-handed alpha
Helix 69
69
C
252 262Right-handed alpha
Helix 70
70
C
264 267Right-handed 310
Helix 71
71
C
275 278Right-handed 310
Helix 72
72
C
279 311Right-handed alpha
Helix 73
73
C
313 315Right-handed 310
Helix 74
74
C
330 334Right-handed 310
Helix 75
75
C
341 346Right-handed alpha
Helix 76
76
C
372 381Right-handed alpha
Helix 77
77
C
394 399Right-handed 310
Helix 78
78
C
423 429Right-handed alpha
Helix 79
79
C
431 434Right-handed 310
Helix 80
80
C
473 475Right-handed 310
Helix 81
81
C
476 494Right-handed alpha
Helix 82
82
D
19 27Right-handed alpha
Helix 83
83
D
34 44Right-handed alpha
Helix 84
84
D
57 67Right-handed alpha
Helix 85
85
D
69 74Right-handed alpha
Helix 86
86
D
88 95Right-handed alpha
Helix 87
87
D
111 115Right-handed 310
Helix 88
88
D
119 123Right-handed 310
Helix 89
89
D
139 141Right-handed 310
Helix 90
90
D
142 152Right-handed alpha
Helix 91
91
D
159 165Right-handed 310
Helix 92
92
D
183 186Right-handed 310
Helix 93
93
D
187 204Right-handed alpha
Helix 94
94
D
232 236Right-handed 310
Helix 95
95
D
244 250Right-handed alpha
Helix 96
96
D
252 262Right-handed alpha
Helix 97
97
D
264 267Right-handed 310
Helix 98
98
D
275 278Right-handed 310
Helix 99
99
D
279 311Right-handed alpha
Helix 100
100
D
313 315Right-handed 310
Helix 101
101
D
330 334Right-handed 310
Helix 102
102
D
341 346Right-handed alpha
Helix 103
103
D
372 381Right-handed alpha
Helix 104
104
D
394 399Right-handed alpha
Helix 105
105
D
423 429Right-handed alpha
Helix 106
106
D
431 434Right-handed 310
Helix 107
107
D
473 475Right-handed 310
Helix 108
108
D
476 494Right-handed alpha
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There are 16 sheets in PDB entry 2W8S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
100 104parallel
Strand 3
A
209 213parallel
Strand 4
A
5 11parallel
Strand 5
A
317 323parallel
Strand 6
A
346 352anti-parallel
Strand 7
A
45 51anti-parallel
Strand 8
A
363 364parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
100 104parallel
Strand 3
A
209 213parallel
Strand 4
A
5 11parallel
Strand 5
A
317 323parallel
Strand 6
A
346 352anti-parallel
Strand 7
A
45 51anti-parallel
Strand 8
A
368 369parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 415first strand
Strand 2
A
436 441anti-parallel
Strand 3
A
445 450anti-parallel
Strand 4
A
456 459anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
510 511anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
100 104parallel
Strand 3
B
209 213parallel
Strand 4
B
5 11parallel
Strand 5
B
317 323parallel
Strand 6
B
346 352anti-parallel
Strand 7
B
45 51anti-parallel
Strand 8
B
363 364parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
100 104parallel
Strand 3
B
209 213parallel
Strand 4
B
5 11parallel
Strand 5
B
317 323parallel
Strand 6
B
346 352anti-parallel
Strand 7
B
45 51anti-parallel
Strand 8
B
368 369parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 415first strand
Strand 2
B
436 441anti-parallel
Strand 3
B
445 450anti-parallel
Strand 4
B
456 459anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 503first strand
Strand 2
B
510 511anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 137first strand
Strand 2
C
100 104parallel
Strand 3
C
209 213parallel
Strand 4
C
5 11parallel
Strand 5
C
317 323parallel
Strand 6
C
346 352anti-parallel
Strand 7
C
45 47anti-parallel
Strand 8
C
362 364parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
368 369parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
410 415first strand
Strand 2
C
436 441anti-parallel
Strand 3
C
445 450anti-parallel
Strand 4
C
456 459anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
502 503first strand
Strand 2
C
510 511anti-parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 137first strand
Strand 2
D
100 104parallel
Strand 3
D
209 213parallel
Strand 4
D
5 11parallel
Strand 5
D
317 323parallel
Strand 6
D
346 352anti-parallel
Strand 7
D
45 47anti-parallel
Strand 8
D
363 364parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 51first strand
Strand 2
D
368 369parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
410 415first strand
Strand 2
D
436 441anti-parallel
Strand 3
D
445 450anti-parallel
Strand 4
D
456 459anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
502 503first strand
Strand 2
D
510 511anti-parallel
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