Analysis of interatomic Contacts of Structural Units in PDB entry:
2W9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W9M entry

There are 2 chains in PDB entry 2W9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8GLY 564
B
 ASP 6GLY 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 2W9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 27Right-handed alpha
Helix 2
2
A
33 46Right-handed alpha
Helix 3
3
A
66 80Right-handed alpha
Helix 4
4
A
82 92Right-handed alpha
Helix 5
5
A
93 100Right-handed alpha
Helix 6
6
A
106 116Right-handed alpha
Helix 7
7
A
120 131Right-handed alpha
Helix 8
8
A
140 158Right-handed alpha
Helix 9
9
A
163 177Right-handed alpha
Helix 10
10
A
178 181Right-handed 310
Helix 11
11
A
185 191Right-handed alpha
Helix 12
12
A
205 213Right-handed alpha
Helix 13
13
A
242 250Right-handed alpha
Helix 14
14
A
252 265Right-handed alpha
Helix 15
15
A
286 294Right-handed alpha
Helix 16
16
A
300 304Right-handed 310
Helix 17
17
A
305 309Right-handed 310
Helix 18
18
A
317 321Right-handed 310
Helix 19
19
A
323 327Right-handed 310
Helix 20
20
A
343 354Right-handed alpha
Helix 21
21
A
368 372Right-handed 310
Helix 22
22
A
375 392Right-handed alpha
Helix 23
23
A
413 418Right-handed alpha
Helix 24
24
A
434 447Right-handed alpha
Helix 25
25
A
471 483Right-handed alpha
Helix 26
26
A
498 506Right-handed alpha
Helix 27
27
A
519 524Right-handed 310
Helix 28
28
A
525 536Right-handed alpha
Helix 29
29
A
539 542Right-handed 310
Helix 30
30
A
544 547Right-handed 310
Helix 31
31
A
548 562Right-handed alpha
Helix 32
32
B
9 28Right-handed alpha
Helix 33
33
B
32 42Right-handed alpha
Helix 34
34
B
50 57Right-handed alpha
Helix 35
35
B
66 80Right-handed alpha
Helix 36
36
B
82 92Right-handed alpha
Helix 37
37
B
93 100Right-handed alpha
Helix 38
38
B
106 116Right-handed alpha
Helix 39
39
B
120 131Right-handed alpha
Helix 40
40
B
140 158Right-handed alpha
Helix 41
41
B
163 177Right-handed alpha
Helix 42
42
B
178 181Right-handed 310
Helix 43
43
B
185 191Right-handed alpha
Helix 44
44
B
205 213Right-handed alpha
Helix 45
45
B
242 250Right-handed alpha
Helix 46
46
B
252 265Right-handed alpha
Helix 47
47
B
286 294Right-handed alpha
Helix 48
48
B
300 304Right-handed 310
Helix 49
49
B
305 309Right-handed 310
Helix 50
50
B
317 321Right-handed 310
Helix 51
51
B
323 327Right-handed 310
Helix 52
52
B
343 354Right-handed alpha
Helix 53
53
B
368 372Right-handed 310
Helix 54
54
B
375 392Right-handed alpha
Helix 55
55
B
413 418Right-handed alpha
Helix 56
56
B
434 447Right-handed alpha
Helix 57
57
B
471 483Right-handed alpha
Helix 58
58
B
498 506Right-handed alpha
Helix 59
59
B
519 524Right-handed 310
Helix 60
60
B
525 536Right-handed alpha
Helix 61
61
B
539 542Right-handed 310
Helix 62
62
B
544 547Right-handed 310
Helix 63
63
B
548 562Right-handed alpha
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There are 10 sheets in PDB entry 2W9M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
194 195anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
231 238parallel
Strand 4
A
224 228anti-parallel
Strand 5
A
217 218anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
274 277anti-parallel
Strand 3
A
280 282anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 333first strand
Strand 2
A
358 361parallel
Strand 3
A
396 397parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
399 403parallel
Strand 3
A
422 426parallel
Strand 4
A
453 454parallel
Strand 5
A
485 489parallel
Strand 6
A
511 514parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
194 195anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 184first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
231 238parallel
Strand 4
B
223 228anti-parallel
Strand 5
B
217 218anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 271first strand
Strand 2
B
274 277anti-parallel
Strand 3
B
280 282anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 333first strand
Strand 2
B
358 361parallel
Strand 3
B
396 397parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 364first strand
Strand 2
B
399 403parallel
Strand 3
B
422 426parallel
Strand 4
B
453 454parallel
Strand 5
B
485 489parallel
Strand 6
B
511 514parallel
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