Analysis of interatomic Contacts of Structural Units in PDB entry:
2W9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2W9P entry

There are 14 chains in PDB entry 2W9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4VAL 90
B
 GLY 4VAL 90
C
 GLY 4VAL 90
D
 GLY 4VAL 90
E
 GLY 4VAL 90
F
 GLY 4VAL 90
G
 GLY 4VAL 90
H
 GLY 4VAL 90
I
 GLY 4VAL 90
J
 GLY 4VAL 90
K
 GLY 4VAL 90
L
 GLY 4VAL 90
M
 GLY 4VAL 90
N
 GLY 4VAL 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 2W9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 32Right-handed alpha
Helix 2
2
A
77 80Right-handed 310
Helix 3
3
B
13 31Right-handed alpha
Helix 4
4
B
77 80Right-handed 310
Helix 5
5
C
13 32Right-handed alpha
Helix 6
6
C
77 80Right-handed 310
Helix 7
7
D
13 32Right-handed alpha
Helix 8
8
D
77 80Right-handed 310
Helix 9
9
E
13 31Right-handed alpha
Helix 10
10
F
13 32Right-handed alpha
Helix 11
11
G
13 29Right-handed alpha
Helix 12
12
H
13 32Right-handed alpha
Helix 13
13
H
77 80Right-handed 310
Helix 14
14
I
13 31Right-handed alpha
Helix 15
15
J
13 31Right-handed alpha
Helix 16
16
J
77 80Right-handed 310
Helix 17
17
K
13 31Right-handed alpha
Helix 18
18
K
77 80Right-handed 310
Helix 19
19
L
13 31Right-handed alpha
Helix 20
20
L
77 80Right-handed 310
Helix 21
21
M
13 31Right-handed alpha
Helix 22
22
M
77 80Right-handed 310
Helix 23
23
N
13 31Right-handed alpha
Helix 24
24
N
77 80Right-handed 310
Back to top of page

There are 15 sheets in PDB entry 2W9P. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA, LB, MA, NA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
51 61anti-parallel
Strand 4
A
65 76anti-parallel
Strand 5
A
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
35 46anti-parallel
Strand 3
B
51 61anti-parallel
Strand 4
B
65 76anti-parallel
Strand 5
B
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
35 46anti-parallel
Strand 3
C
51 61anti-parallel
Strand 4
C
65 76anti-parallel
Strand 5
C
81 88anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
36 46anti-parallel
Strand 3
D
51 60anti-parallel
Strand 4
D
66 76anti-parallel
Strand 5
D
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 8first strand
Strand 2
E
35 46anti-parallel
Strand 3
E
51 61anti-parallel
Strand 4
E
65 76anti-parallel
Strand 5
E
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 8first strand
Strand 2
F
35 47anti-parallel
Strand 3
F
51 61anti-parallel
Strand 4
F
66 76anti-parallel
Strand 5
F
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 7first strand
Strand 2
G
36 46anti-parallel
Strand 3
G
51 60anti-parallel
Strand 4
G
66 76anti-parallel
Strand 5
G
81 88anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 7first strand
Strand 2
H
35 47anti-parallel
Strand 3
H
51 61anti-parallel
Strand 4
H
65 76anti-parallel
Strand 5
H
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
6 7first strand
Strand 2
I
39 46anti-parallel
Strand 3
I
51 61anti-parallel
Strand 4
I
65 75anti-parallel
Strand 5
I
82 90anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
6 8first strand
Strand 2
J
36 46anti-parallel
Strand 3
J
51 60anti-parallel
Strand 4
J
67 76anti-parallel
Strand 5
J
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
6 7first strand
Strand 2
K
35 46anti-parallel
Strand 3
K
51 61anti-parallel
Strand 4
K
65 76anti-parallel
Strand 5
K
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 7first strand
Strand 2
L
44 46anti-parallel
Strand 3
L
51 60anti-parallel
Strand 4
L
36 40anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 7first strand
Strand 2
L
44 46anti-parallel
Strand 3
L
51 60anti-parallel
Strand 4
L
68 75anti-parallel
Strand 5
L
84 88anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
5 8first strand
Strand 2
M
35 46anti-parallel
Strand 3
M
51 61anti-parallel
Strand 4
M
65 76anti-parallel
Strand 5
M
81 89anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in NA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
6 7first strand
Strand 2
N
35 46anti-parallel
Strand 3
N
51 61anti-parallel
Strand 4
N
68 76anti-parallel
Strand 5
N
81 89anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il