Analysis of interatomic Contacts of Structural Units in PDB entry:
2WAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WAF entry

There is 1 chain in PDB entry 2WAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 52HIS 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 2WAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 102Right-handed alpha
Helix 2
2
A
112 121Right-handed alpha
Helix 3
3
A
123 132Right-handed alpha
Helix 4
4
A
149 161Right-handed alpha
Helix 5
5
A
170 183Right-handed alpha
Helix 6
6
A
199 209Right-handed alpha
Helix 7
7
A
210 212Right-handed 310
Helix 8
8
A
230 235Right-handed alpha
Helix 9
9
A
245 256Right-handed alpha
Helix 10
10
A
267 272Right-handed alpha
Helix 11
11
A
272 277Right-handed alpha
Helix 12
12
A
313 334Right-handed alpha
Helix 13
13
A
375 380Right-handed alpha
Helix 14
14
A
384 387Right-handed 310
Helix 15
15
A
388 399Right-handed alpha
Helix 16
16
A
436 442Right-handed alpha
Helix 17
17
A
444 457Right-handed alpha
Helix 18
18
A
467 469Right-handed 310
Helix 19
19
A
470 485Right-handed alpha
Helix 20
20
A
508 516Right-handed alpha
Helix 21
21
A
524 537Right-handed alpha
Helix 22
22
A
577 594Right-handed alpha
Helix 23
23
A
601 606Right-handed alpha
Helix 24
24
A
660 675Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 2WAF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
278 284anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
307 310parallel
Strand 3
A
547 553anti-parallel
Strand 4
A
559 565anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
72 83anti-parallel
Strand 3
A
216 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
264 266anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
355 363anti-parallel
Strand 3
A
342 348anti-parallel
Strand 4
A
645 650anti-parallel
Strand 5
A
634 638anti-parallel
Strand 6
A
613 616anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 410first strand
Strand 2
A
432 435anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 542first strand
Strand 2
A
570 573anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 621first strand
Strand 2
A
629 631anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il