Analysis of interatomic Contacts of Structural Units in PDB entry:
2WAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WAM entry

There are 3 chains in PDB entry 2WAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10GLU 316
B
 ARG 11GLU 316
C
 ALA 10ALA 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2WAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 51Right-handed 310
Helix 2
2
A
52 65Right-handed alpha
Helix 3
3
A
74 79Right-handed alpha
Helix 4
4
A
127 142Right-handed alpha
Helix 5
5
A
171 176Right-handed 310
Helix 6
6
A
190 202Right-handed alpha
Helix 7
7
A
216 218Right-handed 310
Helix 8
8
A
222 238Right-handed alpha
Helix 9
9
A
243 262Right-handed alpha
Helix 10
10
A
264 288Right-handed alpha
Helix 11
11
A
304 316Right-handed alpha
Helix 12
12
B
49 51Right-handed 310
Helix 13
13
B
52 65Right-handed alpha
Helix 14
14
B
74 79Right-handed alpha
Helix 15
15
B
127 142Right-handed alpha
Helix 16
16
B
171 176Right-handed 310
Helix 17
17
B
190 202Right-handed alpha
Helix 18
18
B
216 218Right-handed 310
Helix 19
19
B
222 238Right-handed alpha
Helix 20
20
B
243 262Right-handed alpha
Helix 21
21
B
264 283Right-handed alpha
Helix 22
22
B
304 315Right-handed alpha
Helix 23
23
C
49 51Right-handed 310
Helix 24
24
C
52 65Right-handed alpha
Helix 25
25
C
74 79Right-handed alpha
Helix 26
26
C
127 142Right-handed alpha
Helix 27
27
C
171 176Right-handed 310
Helix 28
28
C
190 202Right-handed alpha
Helix 29
29
C
216 218Right-handed 310
Helix 30
30
C
222 238Right-handed alpha
Helix 31
31
C
243 264Right-handed alpha
Helix 32
32
C
264 284Right-handed alpha
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There are 6 sheets in PDB entry 2WAM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
21 23anti-parallel
Strand 3
A
66 73anti-parallel
Strand 4
A
103 109anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
39 45parallel
Strand 7
A
146 155parallel
Strand 8
A
206 214parallel
Strand 9
A
165 169anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
87 91anti-parallel
Strand 3
C
185 188anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
B
87 90anti-parallel
Strand 3
B
95 98anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
21 23anti-parallel
Strand 3
B
66 73anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
115 122anti-parallel
Strand 6
B
39 45parallel
Strand 7
B
146 155parallel
Strand 8
B
206 214parallel
Strand 9
B
165 169anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
C
87 90anti-parallel
Strand 3
C
95 98anti-parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 17first strand
Strand 2
C
21 23anti-parallel
Strand 3
C
66 73anti-parallel
Strand 4
C
103 109anti-parallel
Strand 5
C
115 122anti-parallel
Strand 6
C
39 45parallel
Strand 7
C
146 155parallel
Strand 8
C
206 214parallel
Strand 9
C
165 169anti-parallel
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