Analysis of interatomic Contacts of Structural Units in PDB entry:
2WBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WBJ entry

There are 8 chains in PDB entry 2WBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	PHE 180
B	THR 3	TRP 188
C	PRO 8	PHE 200
D	MET -1	SER 269
E	GLU 4	PHE 180
F	THR 3	ALA 190
G	ALA 10	SER 202
H	ASP 1	ARG 268

There are 16 helices in PDB entry 2WBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	77	Right-handed alpha
Helix 2	2	B	55	62	Right-handed alpha
Helix 3	3	B	64	83	Right-handed alpha
Helix 4	4	B	86	90	Right-handed 310
Helix 5	5	C	80	84	Right-handed 310
Helix 6	6	D	107	111	Right-handed 310
Helix 7	7	D	142	146	Right-handed 310
Helix 8	8	D	157	165	Right-handed alpha
Helix 9	9	E	59	77	Right-handed alpha
Helix 10	10	F	55	63	Right-handed alpha
Helix 11	11	F	64	83	Right-handed alpha
Helix 12	12	F	86	90	Right-handed 310
Helix 13	13	G	80	84	Right-handed 310
Helix 14	14	H	107	111	Right-handed 310
Helix 15	15	H	142	146	Right-handed 310
Helix 16	16	H	157	165	Right-handed alpha

There are 26 sheets in PDB entry 2WBJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, CD, A, DB, C, EA, EB, EC, FA, FB, GA, GB, GC, HA, HB, HC, HD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	30	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	15	anti-parallel
Strand 5	B	7	18	anti-parallel
Strand 6	B	23	32	anti-parallel
Strand 7	B	35	41	anti-parallel
Strand 8	B	47	49	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	123	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	174	179	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	104	first strand
Strand 2	B	114	123	anti-parallel
Strand 3	B	155	161	anti-parallel
Strand 4	B	143	144	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	104	first strand
Strand 2	B	114	123	anti-parallel
Strand 3	B	155	161	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	172	176	anti-parallel
Strand 3	B	184	187	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	107	110	parallel
Strand 3	C	85	93	anti-parallel
Strand 4	C	29	37	anti-parallel
Strand 5	C	44	50	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	107	110	parallel
Strand 3	C	85	93	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	71	76	anti-parallel
Strand 3	C	61	66	anti-parallel
Strand 4	C	55	57	anti-parallel

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There are 8 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	169	177	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	169	177	anti-parallel
Strand 5	D	197	198	first strand
Strand 6	D	214	221	anti-parallel
Strand 7	D	203	204	anti-parallel
Strand 8	D	214	221	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	41	47	anti-parallel
Strand 3	D	98	103	anti-parallel
Strand 4	D	89	93	anti-parallel

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There are 8 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	136	140	parallel
Strand 3	D	112	120	anti-parallel
Strand 4	D	67	73	first strand
Strand 5	D	52	60	anti-parallel
Strand 6	D	112	120	anti-parallel
Strand 7	D	129	130	anti-parallel
Strand 8	D	112	120	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	187	first strand
Strand 2	D	234	240	anti-parallel
Strand 3	D	259	265	anti-parallel

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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	43	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	19	26	anti-parallel
Strand 4	E	5	15	anti-parallel
Strand 5	F	7	18	anti-parallel
Strand 6	F	23	32	anti-parallel
Strand 7	F	35	41	anti-parallel
Strand 8	F	47	49	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	93	first strand
Strand 2	E	103	112	anti-parallel
Strand 3	E	145	153	anti-parallel
Strand 4	E	133	134	anti-parallel
Strand 5	E	145	153	anti-parallel
Strand 6	E	138	139	anti-parallel
Strand 7	E	145	153	anti-parallel

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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	123	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	174	179	anti-parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	104	first strand
Strand 2	F	114	123	anti-parallel
Strand 3	F	155	161	anti-parallel
Strand 4	F	143	144	anti-parallel
Strand 5	F	155	161	anti-parallel
Strand 6	F	148	149	anti-parallel
Strand 7	F	155	161	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	133	first strand
Strand 2	F	171	176	anti-parallel
Strand 3	F	184	188	anti-parallel

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There are 8 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	107	110	parallel
Strand 3	G	85	93	anti-parallel
Strand 4	G	48	50	first strand
Strand 5	G	29	36	anti-parallel
Strand 6	G	85	93	anti-parallel
Strand 7	G	100	101	anti-parallel
Strand 8	G	85	93	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	71	76	anti-parallel
Strand 3	G	61	66	anti-parallel
Strand 4	G	55	56	anti-parallel

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There are 7 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	134	138	anti-parallel
Strand 3	G	169	177	anti-parallel
Strand 4	G	155	156	anti-parallel
Strand 5	G	169	177	anti-parallel
Strand 6	G	160	164	anti-parallel
Strand 7	G	169	177	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	41	47	anti-parallel
Strand 3	H	98	103	anti-parallel
Strand 4	H	89	93	anti-parallel

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There are 8 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	36	first strand
Strand 2	H	136	140	parallel
Strand 3	H	112	120	anti-parallel
Strand 4	H	67	73	first strand
Strand 5	H	52	60	anti-parallel
Strand 6	H	112	120	anti-parallel
Strand 7	H	129	130	anti-parallel
Strand 8	H	112	120	anti-parallel

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There are 7 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	147	154	first strand
Strand 2	H	168	177	anti-parallel
Strand 3	H	214	221	anti-parallel
Strand 4	H	197	198	anti-parallel
Strand 5	H	214	221	anti-parallel
Strand 6	H	203	204	anti-parallel
Strand 7	H	214	221	anti-parallel

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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	181	187	first strand
Strand 2	H	234	240	anti-parallel
Strand 3	H	259	265	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WBJ