Analysis of interatomic Contacts of Structural Units in PDB entry:
2WBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WBM entry

There are 2 chains in PDB entry 2WBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LYS 232
B
 MET 1LYS 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2WBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 33Right-handed alpha
Helix 2
2
A
39 44Right-handed alpha
Helix 3
3
A
60 69Right-handed alpha
Helix 4
4
A
72 84Right-handed alpha
Helix 5
5
A
89 111Right-handed alpha
Helix 6
6
A
122 133Right-handed alpha
Helix 7
7
A
142 155Right-handed alpha
Helix 8
8
A
172 174Right-handed 310
Helix 9
9
A
175 187Right-handed alpha
Helix 10
10
A
210 222Right-handed alpha
Helix 11
11
B
24 32Right-handed alpha
Helix 12
12
B
39 44Right-handed alpha
Helix 13
13
B
60 69Right-handed alpha
Helix 14
14
B
72 84Right-handed alpha
Helix 15
15
B
89 111Right-handed alpha
Helix 16
16
B
122 133Right-handed alpha
Helix 17
17
B
142 155Right-handed alpha
Helix 18
18
B
172 174Right-handed 310
Helix 19
19
B
175 187Right-handed alpha
Helix 20
20
B
210 223Right-handed alpha
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There are 8 sheets in PDB entry 2WBM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
8 14anti-parallel
Strand 3
A
85 87anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
57 58anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
161 162anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 194first strand
Strand 2
A
200 207anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
227 230anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
8 14anti-parallel
Strand 3
B
85 87anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
57 58anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 113first strand
Strand 2
B
161 162anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 194first strand
Strand 2
B
200 207anti-parallel
Strand 3
B
164 171anti-parallel
Strand 4
B
227 229anti-parallel
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