Analysis of interatomic Contacts of Structural Units in PDB entry:
2WBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WBQ entry

There is 1 chain in PDB entry 2WBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 21GLY 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2WBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 48Right-handed alpha
Helix 2
2
A
53 64Right-handed alpha
Helix 3
3
A
65 67Right-handed 310
Helix 4
4
A
68 79Right-handed alpha
Helix 5
5
A
95 100Right-handed alpha
Helix 6
6
A
111 113Right-handed 310
Helix 7
7
A
114 127Right-handed alpha
Helix 8
8
A
137 141Right-handed 310
Helix 9
9
A
205 213Right-handed alpha
Helix 10
10
A
222 226Right-handed 310
Helix 11
11
A
226 230Right-handed 310
Helix 12
12
A
238 249Right-handed alpha
Helix 13
13
A
278 296Right-handed alpha
Helix 14
14
A
340 346Right-handed 310
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There are 5 sheets in PDB entry 2WBQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
86 90parallel
Strand 3
A
306 310anti-parallel
Strand 4
A
180 187anti-parallel
Strand 5
A
331 338anti-parallel
Strand 6
A
130 134anti-parallel
Strand 7
A
354 355parallel
Strand 8
A
348 351anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
86 90parallel
Strand 3
A
306 310anti-parallel
Strand 4
A
180 187anti-parallel
Strand 5
A
331 338anti-parallel
Strand 6
A
144 146anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
193 198anti-parallel
Strand 4
A
297 300anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
273 274anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
262 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il