Analysis of interatomic Contacts of Structural Units in PDB entry:
2WBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WBV entry

There are 6 chains in PDB entry 2WBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 360	GLN 542
B	SER 357	GLN 542
C	ALA 360	GLN 542
D	PRO 359	GLN 542
E	ALA 361	GLN 542
F	PRO 359	GLN 542

There are 25 helices in PDB entry 2WBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	406	408	Right-handed 310
Helix 2	2	A	457	464	Right-handed 310
Helix 3	3	A	490	492	Right-handed 310
Helix 4	4	A	518	522	Right-handed 310
Helix 5	5	B	357	361	Right-handed 310
Helix 6	6	B	406	408	Right-handed 310
Helix 7	7	B	457	464	Right-handed 310
Helix 8	8	B	490	492	Right-handed 310
Helix 9	9	B	518	522	Right-handed 310
Helix 10	10	C	406	408	Right-handed 310
Helix 11	11	C	459	464	Right-handed 310
Helix 12	12	C	490	492	Right-handed 310
Helix 13	13	C	518	522	Right-handed 310
Helix 14	14	D	406	408	Right-handed 310
Helix 15	15	D	457	464	Right-handed 310
Helix 16	16	D	490	492	Right-handed 310
Helix 17	17	D	518	522	Right-handed 310
Helix 18	18	E	406	408	Right-handed 310
Helix 19	19	E	457	464	Right-handed 310
Helix 20	20	E	490	492	Right-handed 310
Helix 21	21	E	518	522	Right-handed 310
Helix 22	22	F	406	408	Right-handed 310
Helix 23	23	F	457	464	Right-handed 310
Helix 24	24	F	490	492	Right-handed 310
Helix 25	25	F	518	522	Right-handed 310

There are 21 sheets in PDB entry 2WBV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	391	anti-parallel
Strand 3	A	363	366	anti-parallel
Strand 4	A	443	444	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	391	anti-parallel
Strand 3	A	395	404	anti-parallel
Strand 4	A	533	538	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	526	527	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	424	first strand
Strand 2	A	510	517	anti-parallel
Strand 3	A	494	501	anti-parallel
Strand 4	A	474	481	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	391	anti-parallel
Strand 3	B	363	366	anti-parallel
Strand 4	B	443	444	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	391	anti-parallel
Strand 3	B	395	404	anti-parallel
Strand 4	B	533	538	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	526	527	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	424	first strand
Strand 2	B	510	517	anti-parallel
Strand 3	B	494	501	anti-parallel
Strand 4	B	474	481	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	391	anti-parallel
Strand 3	C	363	366	anti-parallel
Strand 4	C	443	444	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	391	anti-parallel
Strand 3	C	395	404	anti-parallel
Strand 4	C	533	538	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	526	527	anti-parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	424	first strand
Strand 2	C	510	517	anti-parallel
Strand 3	C	494	501	anti-parallel
Strand 4	C	474	481	anti-parallel

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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	377	first strand
Strand 2	D	380	391	anti-parallel
Strand 3	D	443	444	first strand
Strand 4	D	363	366	anti-parallel
Strand 5	D	380	391	anti-parallel
Strand 6	D	533	538	first strand
Strand 7	D	395	404	anti-parallel
Strand 8	D	380	391	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	411	first strand
Strand 2	D	526	527	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	424	first strand
Strand 2	D	510	517	anti-parallel
Strand 3	D	494	501	anti-parallel
Strand 4	D	474	481	anti-parallel

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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	377	first strand
Strand 2	E	380	391	anti-parallel
Strand 3	E	443	444	first strand
Strand 4	E	363	366	anti-parallel
Strand 5	E	380	391	anti-parallel
Strand 6	E	533	538	first strand
Strand 7	E	395	404	anti-parallel
Strand 8	E	380	391	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	411	first strand
Strand 2	E	526	527	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	424	first strand
Strand 2	E	510	517	anti-parallel
Strand 3	E	494	501	anti-parallel
Strand 4	E	474	481	anti-parallel

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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	377	first strand
Strand 2	F	380	391	anti-parallel
Strand 3	F	443	444	first strand
Strand 4	F	363	366	anti-parallel
Strand 5	F	380	391	anti-parallel
Strand 6	F	533	538	first strand
Strand 7	F	395	404	anti-parallel
Strand 8	F	380	391	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	411	first strand
Strand 2	F	526	527	anti-parallel

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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	424	first strand
Strand 2	F	510	517	anti-parallel
Strand 3	F	494	501	anti-parallel
Strand 4	F	474	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WBV