Analysis of interatomic Contacts of Structural Units in PDB entry:
2WD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WD5 entry

There are 2 chains in PDB entry 2WD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 499LYS 675
B
 LYS 492GLU 685
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2WD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
500 511Right-handed alpha
Helix 2
2
A
519 522Right-handed alpha
Helix 3
3
A
527 529Right-handed 310
Helix 4
4
A
530 539Right-handed alpha
Helix 5
5
A
540 543Right-handed 310
Helix 6
6
A
549 563Right-handed alpha
Helix 7
7
A
582 588Right-handed 310
Helix 8
8
A
602 604Right-handed 310
Helix 9
9
A
605 613Right-handed alpha
Helix 10
10
A
621 631Right-handed alpha
Helix 11
11
A
655 663Right-handed alpha
Helix 12
12
A
664 671Right-handed alpha
Helix 13
13
B
493 498Right-handed alpha
Helix 14
14
B
500 522Right-handed alpha
Helix 15
15
B
524 529Right-handed alpha
Helix 16
16
B
542 544Right-handed 310
Helix 17
17
B
545 554Right-handed alpha
Helix 18
18
B
555 558Right-handed 310
Helix 19
19
B
564 578Right-handed alpha
Helix 20
20
B
609 612Right-handed 310
Helix 21
21
B
618 627Right-handed alpha
Helix 22
22
B
634 645Right-handed alpha
Helix 23
23
B
674 685Right-handed alpha
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There are 4 sheets in PDB entry 2WD5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 518first strand
Strand 2
A
545 547anti-parallel
Strand 3
A
568 572parallel
Strand 4
B
663 665anti-parallel
Strand 5
B
656 657anti-parallel
Strand 6
B
648 650anti-parallel
Strand 7
B
629 632parallel
Strand 8
B
605 607anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 525first strand
Strand 2
A
598 600anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 593first strand
Strand 2
A
617 619anti-parallel
Strand 3
A
638 640parallel
Strand 4
A
645 646anti-parallel
Strand 5
A
652 654anti-parallel
Strand 6
B
584 588anti-parallel
Strand 7
B
560 562parallel
Strand 8
B
531 534anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
539 540first strand
Strand 2
B
613 614anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il