Analysis of interatomic Contacts of Structural Units in PDB entry:
2WD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WD6 entry

There are 2 chains in PDB entry 2WD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 462PRO 763
B
 ALA 468PRO 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2WD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
462 479Right-handed alpha
Helix 2
2
A
514 525Right-handed alpha
Helix 3
3
A
533 547Right-handed alpha
Helix 4
4
A
697 701Right-handed 310
Helix 5
5
A
705 709Right-handed 310
Helix 6
6
A
716 721Right-handed 310
Helix 7
7
B
468 479Right-handed alpha
Helix 8
8
B
514 524Right-handed alpha
Helix 9
9
B
533 547Right-handed alpha
Helix 10
10
B
697 701Right-handed 310
Helix 11
11
B
705 709Right-handed 310
Helix 12
12
B
716 721Right-handed 310
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There are 11 sheets in PDB entry 2WD6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
574 575anti-parallel
Strand 3
A
578 579anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
582 592anti-parallel
Strand 4
A
620 630anti-parallel
Strand 5
A
730 738anti-parallel
Strand 6
A
663 667anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
563 568anti-parallel
Strand 3
A
582 592anti-parallel
Strand 4
A
620 630anti-parallel
Strand 5
A
636 637anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 558first strand
Strand 2
A
599 604anti-parallel
Strand 3
A
612 615anti-parallel
Strand 4
A
742 745anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 646first strand
Strand 2
A
722 725anti-parallel
Strand 3
A
672 674anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 684first strand
Strand 2
A
688 691anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 495first strand
Strand 2
B
574 575anti-parallel
Strand 3
B
578 579anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 505first strand
Strand 2
B
563 568anti-parallel
Strand 3
B
582 592anti-parallel
Strand 4
B
620 630anti-parallel
Strand 5
B
731 738anti-parallel
Strand 6
B
663 667anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 558first strand
Strand 2
B
599 604anti-parallel
Strand 3
B
612 615anti-parallel
Strand 4
B
742 745anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
643 646first strand
Strand 2
B
722 725anti-parallel
Strand 3
B
672 674anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
681 684first strand
Strand 2
B
688 691anti-parallel
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