Analysis of interatomic Contacts of Structural Units in PDB entry:
2WDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WDA entry

There is 1 chain in PDB entry 2WDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24SER 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2WDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 40Right-handed alpha
Helix 2
2
A
49 68Right-handed alpha
Helix 3
3
A
84 103Right-handed alpha
Helix 4
4
A
111 129Right-handed alpha
Helix 5
5
A
139 145Right-handed alpha
Helix 6
6
A
145 158Right-handed alpha
Helix 7
7
A
158 163Right-handed alpha
Helix 8
8
A
163 178Right-handed alpha
Helix 9
9
A
179 184Right-handed 310
Helix 10
10
A
191 209Right-handed alpha
Helix 11
11
A
211 223Right-handed alpha
Helix 12
12
A
224 226Right-handed 310
Helix 13
13
A
252 269Right-handed alpha
Helix 14
14
A
279 290Right-handed alpha
Helix 15
15
A
291 293Right-handed 310
Helix 16
16
A
302 311Right-handed 310
Helix 17
17
A
324 341Right-handed alpha
Helix 18
18
A
344 362Right-handed alpha
Helix 19
19
A
366 370Right-handed 310
Helix 20
20
A
374 387Right-handed alpha
Helix 21
21
A
402 404Right-handed 310
Helix 22
22
A
438 443Right-handed 310
Helix 23
23
A
600 602Right-handed 310
Helix 24
24
A
640 650Right-handed alpha
Helix 25
25
A
669 671Right-handed 310
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There are 7 sheets in PDB entry 2WDA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
241 243anti-parallel
Strand 3
A
247 248anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
299 300anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 401first strand
Strand 2
A
406 411anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
445 450anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
548 559anti-parallel
Strand 3
A
610 624anti-parallel
Strand 4
A
589 598anti-parallel
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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 515anti-parallel
Strand 3
A
522 529anti-parallel
Strand 4
A
534 542anti-parallel
Strand 5
A
629 637anti-parallel
Strand 6
A
579 582anti-parallel
Strand 7
A
572 575anti-parallel
Strand 8
A
566 569anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 660first strand
Strand 2
A
663 668anti-parallel
Strand 3
A
673 678anti-parallel
Strand 4
A
693 700anti-parallel
Strand 5
A
703 709anti-parallel
Strand 6
A
758 764anti-parallel
Strand 7
A
726 732anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 684first strand
Strand 2
A
687 689anti-parallel
Strand 3
A
718 722anti-parallel
Strand 4
A
745 749anti-parallel
Strand 5
A
736 740anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il