Analysis of interatomic Contacts of Structural Units in PDB entry:
2WDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WDF entry

There is 1 chain in PDB entry 2WDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30GLY 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 2WDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 70Right-handed 310
Helix 2
2
A
77 86Right-handed alpha
Helix 3
3
A
91 98Right-handed alpha
Helix 4
4
A
101 110Right-handed alpha
Helix 5
5
A
114 132Right-handed alpha
Helix 6
6
A
148 154Right-handed alpha
Helix 7
7
A
156 167Right-handed alpha
Helix 8
8
A
174 179Right-handed 310
Helix 9
9
A
180 191Right-handed alpha
Helix 10
10
A
232 237Right-handed alpha
Helix 11
11
A
238 242Right-handed 310
Helix 12
12
A
250 264Right-handed alpha
Helix 13
13
A
276 285Right-handed alpha
Helix 14
14
A
347 350Right-handed 310
Helix 15
15
A
353 365Right-handed alpha
Helix 16
16
A
367 373Right-handed alpha
Helix 17
17
A
390 404Right-handed alpha
Helix 18
18
A
429 437Right-handed alpha
Helix 19
19
A
450 465Right-handed alpha
Helix 20
20
A
521 526Right-handed 310
Helix 21
21
A
537 549Right-handed alpha
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There are 7 sheets in PDB entry 2WDF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
170 171parallel
Strand 3
A
135 140parallel
Strand 4
A
40 45parallel
Strand 5
A
322 331anti-parallel
Strand 6
A
334 344anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
245 246anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
221 228anti-parallel
Strand 3
A
268 273parallel
Strand 4
A
292 295parallel
Strand 5
A
311 315parallel
Strand 6
A
306 308anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
550 551parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
409 412anti-parallel
Strand 3
A
512 518parallel
Strand 4
A
442 449anti-parallel
Strand 5
A
535 536anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
409 412anti-parallel
Strand 3
A
512 518parallel
Strand 4
A
442 449anti-parallel
Strand 5
A
527 528anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
497 502anti-parallel
Strand 3
A
483 487anti-parallel
Strand 4
A
559 561parallel
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