Analysis of interatomic Contacts of Structural Units in PDB entry:
2WDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WDQ entry

There are 12 chains in PDB entry 2WDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 588
B
 MET 1ALA 238
C
 GLN 8VAL 128
D
 ASN 11VAL 115
E
 MET 1TYR 588
F
 MET 1ALA 238
G
 GLN 8VAL 128
H
 ASN 11VAL 115
I
 MET 1TYR 588
J
 MET 1ALA 238
K
 GLN 8VAL 128
L
 ASN 11VAL 115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are129 helices in PDB entry 2WDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 29Right-handed alpha
Helix 2
2
A
40 44Right-handed 310
Helix 3
3
A
44 49Right-handed 310
Helix 4
4
A
64 76Right-handed alpha
Helix 5
5
A
81 102Right-handed alpha
Helix 6
6
A
140 156Right-handed alpha
Helix 7
7
A
205 209Right-handed 310
Helix 8
8
A
220 229Right-handed alpha
Helix 9
9
A
255 260Right-handed alpha
Helix 10
10
A
272 277Right-handed alpha
Helix 11
11
A
280 284Right-handed 310
Helix 12
12
A
285 299Right-handed alpha
Helix 13
13
A
315 317Right-handed 310
Helix 14
14
A
318 327Right-handed alpha
Helix 15
15
A
327 338Right-handed alpha
Helix 16
16
A
402 418Right-handed alpha
Helix 17
17
A
418 427Right-handed alpha
Helix 18
18
A
433 440Right-handed alpha
Helix 19
19
A
441 450Right-handed alpha
Helix 20
20
A
455 471Right-handed alpha
Helix 21
21
A
476 495Right-handed alpha
Helix 22
22
A
507 533Right-handed alpha
Helix 23
23
A
549 554Right-handed alpha
Helix 24
24
B
34 46Right-handed alpha
Helix 25
25
B
75 77Right-handed 310
Helix 26
26
B
79 82Right-handed 310
Helix 27
27
B
107 117Right-handed alpha
Helix 28
28
B
136 142Right-handed alpha
Helix 29
29
B
155 158Right-handed 310
Helix 30
30
B
159 165Right-handed alpha
Helix 31
31
B
171 183Right-handed alpha
Helix 32
32
B
189 196Right-handed alpha
Helix 33
33
B
210 216Right-handed alpha
Helix 34
34
B
221 238Right-handed alpha
Helix 35
35
C
14 18Right-handed 310
Helix 36
36
C
21 53Right-handed alpha
Helix 37
37
C
54 67Right-handed alpha
Helix 38
38
C
67 96Right-handed alpha
Helix 39
39
C
102 127Right-handed alpha
Helix 40
40
D
11 38Right-handed alpha
Helix 41
41
D
44 54Right-handed alpha
Helix 42
42
D
54 84Right-handed alpha
Helix 43
43
D
86 113Right-handed alpha
Helix 44
44
E
16 29Right-handed alpha
Helix 45
45
E
40 44Right-handed 310
Helix 46
46
E
44 49Right-handed 310
Helix 47
47
E
64 76Right-handed alpha
Helix 48
48
E
81 102Right-handed alpha
Helix 49
49
E
140 156Right-handed alpha
Helix 50
50
E
205 209Right-handed 310
Helix 51
51
E
220 229Right-handed alpha
Helix 52
52
E
255 260Right-handed alpha
Helix 53
53
E
272 277Right-handed alpha
Helix 54
54
E
280 284Right-handed 310
Helix 55
55
E
285 299Right-handed alpha
Helix 56
56
E
315 317Right-handed 310
Helix 57
57
E
318 327Right-handed alpha
Helix 58
58
E
327 339Right-handed alpha
Helix 59
59
E
402 418Right-handed alpha
Helix 60
60
E
418 427Right-handed alpha
Helix 61
61
E
433 440Right-handed alpha
Helix 62
62
E
441 450Right-handed alpha
Helix 63
63
E
455 471Right-handed alpha
Helix 64
64
E
476 495Right-handed alpha
Helix 65
65
E
507 533Right-handed alpha
Helix 66
66
E
549 554Right-handed alpha
Helix 67
67
F
34 46Right-handed alpha
Helix 68
68
F
75 77Right-handed 310
Helix 69
69
F
79 82Right-handed 310
Helix 70
70
F
107 117Right-handed alpha
Helix 71
71
F
136 142Right-handed alpha
Helix 72
72
F
155 158Right-handed 310
Helix 73
73
F
159 165Right-handed alpha
Helix 74
74
F
170 183Right-handed alpha
Helix 75
75
F
189 196Right-handed alpha
Helix 76
76
F
210 216Right-handed alpha
Helix 77
77
F
221 238Right-handed alpha
Helix 78
78
G
14 18Right-handed 310
Helix 79
79
G
21 53Right-handed alpha
Helix 80
80
G
54 67Right-handed alpha
Helix 81
81
G
67 96Right-handed alpha
Helix 82
82
G
102 127Right-handed alpha
Helix 83
83
H
11 38Right-handed alpha
Helix 84
84
H
44 54Right-handed alpha
Helix 85
85
H
54 84Right-handed alpha
Helix 86
86
H
86 113Right-handed alpha
Helix 87
87
I
16 29Right-handed alpha
Helix 88
88
I
40 44Right-handed 310
Helix 89
89
I
44 49Right-handed 310
Helix 90
90
I
64 76Right-handed alpha
Helix 91
91
I
81 102Right-handed alpha
Helix 92
92
I
140 156Right-handed alpha
Helix 93
93
I
205 209Right-handed 310
Helix 94
94
I
220 229Right-handed alpha
Helix 95
95
I
255 260Right-handed alpha
Helix 96
96
I
272 277Right-handed alpha
Helix 97
97
I
280 284Right-handed 310
Helix 98
98
I
285 299Right-handed alpha
Helix 99
99
I
315 317Right-handed 310
Helix 100
100
I
318 327Right-handed alpha
Helix 101
101
I
327 338Right-handed alpha
Helix 102
102
I
402 418Right-handed alpha
Helix 103
103
I
418 427Right-handed alpha
Helix 104
104
I
433 440Right-handed alpha
Helix 105
105
I
441 450Right-handed alpha
Helix 106
106
I
455 471Right-handed alpha
Helix 107
107
I
476 496Right-handed alpha
Helix 108
108
I
507 533Right-handed alpha
Helix 109
109
I
549 554Right-handed alpha
Helix 110
110
J
34 46Right-handed alpha
Helix 111
111
J
75 77Right-handed 310
Helix 112
112
J
78 83Right-handed alpha
Helix 113
113
J
107 117Right-handed alpha
Helix 114
114
J
136 142Right-handed alpha
Helix 115
115
J
155 158Right-handed 310
Helix 116
116
J
159 165Right-handed alpha
Helix 117
117
J
170 183Right-handed alpha
Helix 118
118
J
189 196Right-handed alpha
Helix 119
119
J
210 216Right-handed alpha
Helix 120
120
J
221 238Right-handed alpha
Helix 121
121
K
14 18Right-handed 310
Helix 122
122
K
21 53Right-handed alpha
Helix 123
123
K
54 67Right-handed alpha
Helix 124
124
K
67 96Right-handed alpha
Helix 125
125
K
102 127Right-handed alpha
Helix 126
126
L
11 38Right-handed alpha
Helix 127
127
L
44 54Right-handed alpha
Helix 128
128
L
54 84Right-handed alpha
Helix 129
129
L
86 113Right-handed alpha
Back to top of page

There are 24 sheets in PDB entry 2WDQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, EA, EB, EC, ED, EE, EF, FA, FB, IA, IB, IC, ID, IE, IF, JA, JB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
33 37parallel
Strand 3
A
5 13parallel
Strand 4
A
190 200parallel
Strand 5
A
177 184anti-parallel
Strand 6
A
164 171anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
33 37parallel
Strand 3
A
5 13parallel
Strand 4
A
190 200parallel
Strand 5
A
377 385parallel
Strand 6
A
367 371anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
134 135anti-parallel
Strand 3
A
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
556 560anti-parallel
Strand 3
A
565 569anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 246first strand
Strand 2
A
347 356anti-parallel
Strand 3
A
311 314anti-parallel
Strand 4
A
263 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
390 391parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 26first strand
Strand 2
B
2 9anti-parallel
Strand 3
B
89 92parallel
Strand 4
B
64 67anti-parallel
Strand 5
B
70 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 162first strand
Strand 2
E
33 37parallel
Strand 3
E
5 13parallel
Strand 4
E
190 200parallel
Strand 5
E
177 184anti-parallel
Strand 6
E
164 171anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 162first strand
Strand 2
E
33 37parallel
Strand 3
E
5 13parallel
Strand 4
E
190 200parallel
Strand 5
E
377 385parallel
Strand 6
E
367 371anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
134 135anti-parallel
Strand 3
E
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
233 234first strand
Strand 2
E
556 560anti-parallel
Strand 3
E
565 569anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
239 246first strand
Strand 2
E
347 356anti-parallel
Strand 3
E
311 314anti-parallel
Strand 4
E
263 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
360 361first strand
Strand 2
E
390 391parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 26first strand
Strand 2
F
2 9anti-parallel
Strand 3
F
89 92parallel
Strand 4
F
64 67anti-parallel
Strand 5
F
70 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
99 101first strand
Strand 2
F
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
159 162first strand
Strand 2
I
33 37parallel
Strand 3
I
5 13parallel
Strand 4
I
190 200parallel
Strand 5
I
177 184anti-parallel
Strand 6
I
164 171anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
159 162first strand
Strand 2
I
33 37parallel
Strand 3
I
5 13parallel
Strand 4
I
190 200parallel
Strand 5
I
377 385parallel
Strand 6
I
367 371anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in IC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
53 54first strand
Strand 2
I
134 135anti-parallel
Strand 3
I
116 117anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in ID sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
233 234first strand
Strand 2
I
556 560anti-parallel
Strand 3
I
565 569anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in IE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
239 246first strand
Strand 2
I
347 356anti-parallel
Strand 3
I
311 314anti-parallel
Strand 4
I
263 265anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in IF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
360 361first strand
Strand 2
I
390 391parallel
Back to list of sheets
Back to top of page

There are 5 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
19 26first strand
Strand 2
J
2 9anti-parallel
Strand 3
J
89 92parallel
Strand 4
J
64 67anti-parallel
Strand 5
J
70 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
99 101first strand
Strand 2
J
104 105anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il