Analysis of interatomic Contacts of Structural Units in PDB entry:
2WGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WGD entry

There is 1 chain in PDB entry 2WGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2WGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 38Right-handed alpha
Helix 2
2
A
48 55Right-handed alpha
Helix 3
3
A
67 72Right-handed 310
Helix 4
4
A
73 80Right-handed alpha
Helix 5
5
A
81 98Right-handed alpha
Helix 6
6
A
104 106Right-handed 310
Helix 7
7
A
121 133Right-handed alpha
Helix 8
8
A
134 137Right-handed 310
Helix 9
9
A
140 146Right-handed alpha
Helix 10
10
A
148 159Right-handed alpha
Helix 11
11
A
169 171Right-handed 310
Helix 12
12
A
172 187Right-handed alpha
Helix 13
13
A
203 212Right-handed alpha
Helix 14
14
A
222 226Right-handed 310
Helix 15
15
A
251 257Right-handed alpha
Helix 16
16
A
284 299Right-handed alpha
Helix 17
17
A
301 305Right-handed 310
Helix 18
18
A
315 329Right-handed alpha
Helix 19
19
A
339 344Right-handed alpha
Helix 20
20
A
346 365Right-handed alpha
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There are 3 sheets in PDB entry 2WGD. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
108 114parallel
Strand 3
A
192 198parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
14 23anti-parallel
Strand 6
A
263 272anti-parallel
Strand 7
A
407 414anti-parallel
Strand 8
A
396 403anti-parallel
Strand 9
A
307 309parallel
Strand 10
A
335 337parallel
Strand 11
A
383 384parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
60 61anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
390 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il