Analysis of interatomic Contacts of Structural Units in PDB entry:
2WHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WHM entry

There is 1 chain in PDB entry 2WHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 43LYS 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2WHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 69Right-handed alpha
Helix 2
2
A
95 102Right-handed alpha
Helix 3
3
A
113 115Right-handed 310
Helix 4
4
A
124 134Right-handed alpha
Helix 5
5
A
149 153Right-handed 310
Helix 6
6
A
168 172Right-handed 310
Helix 7
7
A
177 194Right-handed alpha
Helix 8
8
A
226 244Right-handed alpha
Helix 9
9
A
263 269Right-handed alpha
Helix 10
10
A
291 313Right-handed alpha
Helix 11
11
A
324 330Right-handed alpha
Helix 12
12
A
336 348Right-handed alpha
Helix 13
13
A
350 354Right-handed 310
Helix 14
14
A
384 390Right-handed alpha
Helix 15
15
A
391 402Right-handed alpha
Helix 16
16
A
407 411Right-handed 310
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There are 4 sheets in PDB entry 2WHM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
419 421parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
279 280parallel
Strand 3
A
250 254parallel
Strand 4
A
205 208parallel
Strand 5
A
137 141parallel
Strand 6
A
107 111parallel
Strand 7
A
73 78parallel
Strand 8
A
405 406parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
279 280parallel
Strand 3
A
250 254parallel
Strand 4
A
205 208parallel
Strand 5
A
137 141parallel
Strand 6
A
107 111parallel
Strand 7
A
73 78parallel
Strand 8
A
356 359parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
320 323parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il