Analysis of interatomic Contacts of Structural Units in PDB entry:
2WHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WHY entry

There are 4 chains in PDB entry 2WHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 19ALA 301
B
 GLY 12THR 13
B
 GLY 15THR 16
B
 GLY 18THR 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 54Right-handed alpha
Helix 2
2
A
68 72Right-handed 310
Helix 3
3
A
88 96Right-handed alpha
Helix 4
4
A
107 115Right-handed alpha
Helix 5
6
A
129 142Right-handed alpha
Helix 6
7
A
143 165Right-handed alpha
Helix 7
8
A
166 171Right-handed alpha
Helix 8
9
A
193 198Right-handed alpha
Helix 9
10
A
206 211Right-handed alpha
Helix 10
11
A
219 227Right-handed alpha
Helix 11
12
A
237 241Right-handed 310
Helix 12
13
A
245 253Right-handed alpha
Helix 13
14
A
255 258Right-handed 310
Helix 14
15
A
259 265Right-handed alpha
Helix 15
16
A
280 297Right-handed alpha
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There are 4 sheets in PDB entry 2WHY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
27 31anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
99 103parallel
Strand 3
A
120 123parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
79 83parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 186first strand
Strand 2
A
174 180anti-parallel
Strand 3
A
230 235parallel
Strand 4
A
267 269parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il