Analysis of interatomic Contacts of Structural Units in PDB entry:
2WII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WII entry

There are 2 chains in PDB entry 2WII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLN 642
B	ASP 730	TYR 1370

There are 37 helices in PDB entry 2WII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	59	Right-handed 310
Helix 2	2	A	281	289	Right-handed alpha
Helix 3	3	A	294	298	Right-handed 310
Helix 4	4	A	426	430	Right-handed 310
Helix 5	5	A	458	463	Right-handed alpha
Helix 6	6	A	500	504	Right-handed 310
Helix 7	7	A	578	584	Right-handed alpha
Helix 8	8	A	590	602	Right-handed alpha
Helix 9	9	A	612	621	Right-handed alpha
Helix 10	10	B	735	739	Right-handed 310
Helix 11	11	B	926	931	Right-handed alpha
Helix 12	12	B	974	979	Right-handed 310
Helix 13	13	B	990	1010	Right-handed alpha
Helix 14	14	B	1011	1016	Right-handed alpha
Helix 15	15	B	1018	1036	Right-handed alpha
Helix 16	16	B	1053	1068	Right-handed alpha
Helix 17	17	B	1074	1089	Right-handed alpha
Helix 18	18	B	1104	1113	Right-handed 310
Helix 19	19	B	1116	1132	Right-handed alpha
Helix 20	20	B	1132	1137	Right-handed alpha
Helix 21	21	B	1142	1158	Right-handed alpha
Helix 22	22	B	1163	1177	Right-handed alpha
Helix 23	23	B	1182	1192	Right-handed alpha
Helix 24	24	B	1194	1196	Right-handed 310
Helix 25	25	B	1203	1222	Right-handed alpha
Helix 26	26	B	1226	1237	Right-handed alpha
Helix 27	27	B	1246	1264	Right-handed alpha
Helix 28	28	B	1292	1294	Right-handed 310
Helix 29	29	B	1392	1401	Right-handed alpha
Helix 30	30	B	1408	1414	Right-handed alpha
Helix 31	31	B	1486	1493	Right-handed alpha
Helix 32	32	B	1506	1516	Right-handed alpha
Helix 33	33	B	1568	1573	Right-handed alpha
Helix 34	34	B	1585	1587	Right-handed 310
Helix 35	35	B	1592	1596	Right-handed 310
Helix 36	36	B	1611	1616	Right-handed alpha
Helix 37	37	B	1620	1637	Right-handed alpha

There are 31 sheets in PDB entry 2WII. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, BA, BB, BC, BD, BE, BF, BG, BH, BI, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	3	9	anti-parallel
Strand 4	A	622	626	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	93	102	parallel
Strand 3	A	82	90	anti-parallel
Strand 4	A	31	39	anti-parallel
Strand 5	A	46	54	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	112	first strand
Strand 2	A	122	131	anti-parallel
Strand 3	A	166	172	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	196	202	parallel
Strand 3	A	180	188	anti-parallel
Strand 4	A	140	146	anti-parallel
Strand 5	A	152	159	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	216	first strand
Strand 2	A	229	237	anti-parallel
Strand 3	A	275	280	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	316	327	parallel
Strand 3	A	301	310	anti-parallel
Strand 4	A	245	255	anti-parallel
Strand 5	A	258	271	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	347	355	anti-parallel
Strand 3	A	384	390	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	416	423	parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	366	369	anti-parallel
Strand 5	A	372	378	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	438	first strand
Strand 2	A	448	456	anti-parallel
Strand 3	A	492	498	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	485	first strand
Strand 2	A	467	474	anti-parallel
Strand 3	A	506	517	anti-parallel
Strand 4	A	521	532	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	545	first strand
Strand 2	A	558	566	anti-parallel
Strand 3	B	764	772	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	779	788	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	748	749	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	B	753	755	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	807	812	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	870	880	anti-parallel
Strand 4	B	850	851	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	818	first strand
Strand 2	B	900	910	parallel
Strand 3	B	884	894	anti-parallel
Strand 4	B	838	844	anti-parallel
Strand 5	B	860	866	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	925	first strand
Strand 2	B	1317	1328	anti-parallel
Strand 3	B	955	963	anti-parallel
Strand 4	B	1298	1302	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	940	first strand
Strand 2	B	1308	1315	anti-parallel
Strand 3	B	1271	1277	anti-parallel
Strand 4	B	1285	1290	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1339	1347	first strand
Strand 2	B	1360	1370	anti-parallel
Strand 3	B	1435	1443	anti-parallel
Strand 4	B	1389	1391	anti-parallel

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There are 5 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1406	first strand
Strand 2	B	1421	1426	anti-parallel
Strand 3	B	1379	1384	anti-parallel
Strand 4	B	1453	1459	anti-parallel
Strand 5	B	1466	1471	anti-parallel

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There are 7 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1589	1590	first strand
Strand 2	B	1597	1599	anti-parallel
Strand 3	B	1559	1565	parallel
Strand 4	B	1536	1548	anti-parallel
Strand 5	B	1521	1531	anti-parallel
Strand 6	B	1579	1584	anti-parallel
Strand 7	B	1605	1609	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	29	34	anti-parallel
Strand 3	C	44	48	anti-parallel
Strand 4	C	53	55	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	63	64	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	81	first strand
Strand 2	C	91	96	anti-parallel
Strand 3	C	108	110	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	103	first strand
Strand 2	C	122	125	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	150	151	anti-parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	138	first strand
Strand 2	C	159	160	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	186	189	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	209	210	anti-parallel

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There are 4 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	202	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	230	234	anti-parallel
Strand 4	C	237	238	anti-parallel

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There are 2 strands in CK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	244	246	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WII

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WII