Analysis of interatomic Contacts of Structural Units in PDB entry:
2WJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WJV entry

There are 4 chains in PDB entry 2WJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 116MET 911
B
 LYS 116PHE 913
D
 ALA 1102HIS 1198
E
 ALA 1102HIS 1198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 73 helices in PDB entry 2WJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
130 132Right-handed 310
Helix 2
2
A
154 164Right-handed alpha
Helix 3
3
A
225 229Right-handed 310
Helix 4
4
A
247 254Right-handed alpha
Helix 5
5
A
258 269Right-handed alpha
Helix 6
6
A
298 322Right-handed alpha
Helix 7
7
A
335 339Right-handed 310
Helix 8
8
A
417 433Right-handed alpha
Helix 9
9
A
438 446Right-handed alpha
Helix 10
10
A
472 484Right-handed alpha
Helix 11
11
A
497 511Right-handed alpha
Helix 12
12
A
523 536Right-handed alpha
Helix 13
13
A
546 550Right-handed 310
Helix 14
14
A
556 559Right-handed 310
Helix 15
15
A
560 567Right-handed alpha
Helix 16
16
A
571 583Right-handed alpha
Helix 17
17
A
588 609Right-handed alpha
Helix 18
18
A
618 622Right-handed 310
Helix 19
19
A
622 626Right-handed 310
Helix 20
20
A
637 641Right-handed 310
Helix 21
21
A
642 651Right-handed alpha
Helix 22
22
A
672 678Right-handed alpha
Helix 23
23
A
683 692Right-handed alpha
Helix 24
24
A
705 717Right-handed alpha
Helix 25
25
A
727 731Right-handed 310
Helix 26
26
A
766 784Right-handed alpha
Helix 27
27
A
786 788Right-handed 310
Helix 28
28
A
796 811Right-handed alpha
Helix 29
29
A
814 820Right-handed alpha
Helix 30
30
A
826 830Right-handed 310
Helix 31
31
A
850 854Right-handed 310
Helix 32
32
A
855 863Right-handed alpha
Helix 33
33
A
875 880Right-handed alpha
Helix 34
34
A
882 895Right-handed alpha
Helix 35
35
A
902 906Right-handed 310
Helix 36
36
B
130 132Right-handed 310
Helix 37
37
B
154 164Right-handed alpha
Helix 38
38
A
116 215Right-handed alpha
Helix 39
39
B
225 229Right-handed 310
Helix 40
40
B
247 254Right-handed alpha
Helix 41
41
B
258 269Right-handed alpha
Helix 42
42
B
276 280Right-handed 310
Helix 43
43
B
298 322Right-handed alpha
Helix 44
44
B
417 433Right-handed alpha
Helix 45
45
B
438 446Right-handed alpha
Helix 46
46
B
472 484Right-handed alpha
Helix 47
47
B
497 511Right-handed alpha
Helix 48
48
B
523 537Right-handed alpha
Helix 49
49
B
546 550Right-handed 310
Helix 50
50
B
556 559Right-handed 310
Helix 51
51
B
560 567Right-handed alpha
Helix 52
52
B
571 585Right-handed alpha
Helix 53
53
B
588 609Right-handed alpha
Helix 54
54
B
618 622Right-handed 310
Helix 55
55
B
622 626Right-handed 310
Helix 56
56
B
637 641Right-handed 310
Helix 57
57
B
642 651Right-handed alpha
Helix 58
58
B
672 678Right-handed alpha
Helix 59
59
B
683 692Right-handed alpha
Helix 60
60
B
705 717Right-handed alpha
Helix 61
61
B
766 784Right-handed alpha
Helix 62
62
B
786 788Right-handed 310
Helix 63
63
B
796 811Right-handed alpha
Helix 64
64
B
814 820Right-handed alpha
Helix 65
65
B
825 830Right-handed alpha
Helix 66
66
B
850 854Right-handed 310
Helix 67
67
B
855 863Right-handed alpha
Helix 68
68
B
875 880Right-handed alpha
Helix 69
69
B
882 895Right-handed alpha
Helix 70
70
B
902 906Right-handed 310
Helix 71
71
D
1107 1127Right-handed alpha
Helix 72
72
D
1192 1198Right-handed alpha
Helix 73
73
E
1107 1129Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 2WJV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
204 209anti-parallel
Strand 4
D
1168 1174parallel
Strand 5
D
1183 1189anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 238anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
409 413anti-parallel
Strand 3
A
361 366anti-parallel
Strand 4
A
374 382anti-parallel
Strand 5
A
391 394anti-parallel
Strand 6
A
342 345anti-parallel
Strand 7
A
331 334anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 543first strand
Strand 2
A
612 616parallel
Strand 3
A
517 521parallel
Strand 4
A
632 635parallel
Strand 5
A
656 661parallel
Strand 6
A
487 491parallel
Strand 7
A
696 697parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
700 701first strand
Strand 2
A
722 723parallel
Back to list of sheets
Back to top of page

There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 824first strand
Strand 2
A
790 793parallel
Strand 3
A
834 840parallel
Strand 4
A
866 874parallel
Strand 5
A
746 750parallel
Strand 6
A
898 900parallel
Strand 7
A
907 908anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 758first strand
Strand 2
A
763 765anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
134 137anti-parallel
Strand 3
B
168 170anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 231first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
204 209anti-parallel
Strand 4
E
1168 1177parallel
Strand 5
E
1180 1189anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
237 238anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
409 413anti-parallel
Strand 3
B
361 366anti-parallel
Strand 4
B
374 382anti-parallel
Strand 5
B
391 395anti-parallel
Strand 6
B
342 345anti-parallel
Strand 7
B
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
541 543first strand
Strand 2
B
612 616parallel
Strand 3
B
517 521parallel
Strand 4
B
632 635parallel
Strand 5
B
656 661parallel
Strand 6
B
487 491parallel
Strand 7
B
696 697parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
700 701first strand
Strand 2
B
722 723parallel
Back to list of sheets
Back to top of page

There are 7 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
822 824first strand
Strand 2
B
790 793parallel
Strand 3
B
834 840parallel
Strand 4
B
866 874parallel
Strand 5
B
746 750parallel
Strand 6
B
898 900parallel
Strand 7
B
907 908anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il