Analysis of interatomic Contacts of Structural Units in PDB entry:
2WK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WK4 entry

There are 2 chains in PDB entry 2WK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLY 502
B
 ASP 1GLY 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 2WK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 66Right-handed alpha
Helix 2
2
A
67 70Right-handed 310
Helix 3
3
A
76 96Right-handed alpha
Helix 4
4
A
104 110Right-handed alpha
Helix 5
5
A
126 128Right-handed 310
Helix 6
6
A
138 154Right-handed alpha
Helix 7
7
A
173 178Right-handed alpha
Helix 8
8
A
188 209Right-handed alpha
Helix 9
9
A
223 232Right-handed alpha
Helix 10
10
A
245 250Right-handed alpha
Helix 11
11
A
251 265Right-handed alpha
Helix 12
12
A
269 281Right-handed alpha
Helix 13
13
A
304 327Right-handed alpha
Helix 14
14
A
335 340Right-handed alpha
Helix 15
15
A
354 360Right-handed alpha
Helix 16
16
A
360 371Right-handed alpha
Helix 17
17
A
409 418Right-handed alpha
Helix 18
18
A
435 452Right-handed alpha
Helix 19
19
A
454 472Right-handed alpha
Helix 20
20
A
480 494Right-handed alpha
Helix 21
21
B
56 66Right-handed alpha
Helix 22
22
B
67 70Right-handed 310
Helix 23
23
B
76 96Right-handed alpha
Helix 24
24
B
104 112Right-handed alpha
Helix 25
25
B
126 129Right-handed 310
Helix 26
26
B
138 154Right-handed alpha
Helix 27
27
B
173 178Right-handed alpha
Helix 28
28
B
188 208Right-handed alpha
Helix 29
29
B
223 233Right-handed alpha
Helix 30
30
B
246 250Right-handed 310
Helix 31
31
B
251 265Right-handed alpha
Helix 32
32
B
269 281Right-handed alpha
Helix 33
33
B
304 327Right-handed alpha
Helix 34
34
B
335 340Right-handed alpha
Helix 35
35
B
354 360Right-handed alpha
Helix 36
36
B
360 371Right-handed alpha
Helix 37
37
B
409 418Right-handed alpha
Helix 38
38
B
435 451Right-handed alpha
Helix 39
39
B
454 472Right-handed alpha
Helix 40
40
B
476 479Right-handed 310
Helix 41
41
B
480 494Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 2WK4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
290 293anti-parallel
Strand 3
A
284 287anti-parallel
Strand 4
A
161 166parallel
Strand 5
A
183 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
419 425anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 242first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
341 345anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
395 400anti-parallel
Strand 3
A
403 408anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
10 12anti-parallel
Strand 3
B
290 293anti-parallel
Strand 4
B
284 287anti-parallel
Strand 5
B
161 167parallel
Strand 6
B
182 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
419 420anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 43first strand
Strand 2
B
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 242first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
341 345anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
395 398anti-parallel
Strand 3
B
405 408anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il