Analysis of interatomic Contacts of Structural Units in PDB entry:
2WK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WK8 entry

There are 2 chains in PDB entry 2WK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ARG 389
B
 LEU 6ARG 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2WK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 22Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
76 81Right-handed 310
Helix 4
4
A
82 86Right-handed 310
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
115 120Right-handed alpha
Helix 7
7
A
133 138Right-handed alpha
Helix 8
8
A
154 165Right-handed alpha
Helix 9
9
A
184 195Right-handed alpha
Helix 10
10
A
223 227Right-handed 310
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
254 259Right-handed alpha
Helix 13
13
A
259 265Right-handed alpha
Helix 14
14
A
269 274Right-handed alpha
Helix 15
15
A
276 285Right-handed alpha
Helix 16
16
A
286 302Right-handed alpha
Helix 17
17
A
324 338Right-handed alpha
Helix 18
18
A
366 381Right-handed alpha
Helix 19
19
B
7 22Right-handed alpha
Helix 20
20
B
55 67Right-handed alpha
Helix 21
21
B
89 97Right-handed alpha
Helix 22
22
B
115 120Right-handed alpha
Helix 23
23
B
133 138Right-handed alpha
Helix 24
24
B
154 165Right-handed alpha
Helix 25
25
B
184 195Right-handed alpha
Helix 26
26
B
223 227Right-handed 310
Helix 27
27
B
250 254Right-handed 310
Helix 28
28
B
254 258Right-handed 310
Helix 29
29
B
259 265Right-handed alpha
Helix 30
30
B
269 274Right-handed alpha
Helix 31
31
B
276 286Right-handed alpha
Helix 32
32
B
286 302Right-handed alpha
Helix 33
33
B
324 338Right-handed alpha
Helix 34
34
B
366 381Right-handed alpha
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There are 4 sheets in PDB entry 2WK8. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
245 247anti-parallel
Strand 3
A
229 231anti-parallel
Strand 4
A
199 202parallel
Strand 5
A
170 173parallel
Strand 6
A
125 129parallel
Strand 7
A
146 150parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 321first strand
Strand 2
A
356 360anti-parallel
Strand 3
A
344 345anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
245 247anti-parallel
Strand 3
B
229 231anti-parallel
Strand 4
B
199 202parallel
Strand 5
B
170 173parallel
Strand 6
B
125 129parallel
Strand 7
B
146 150parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 321first strand
Strand 2
B
356 360anti-parallel
Strand 3
B
344 345anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il