Analysis of interatomic Contacts of Structural Units in PDB entry:
2WKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WKB entry

There are 12 chains in PDB entry 2WKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1PRO 1
A
 CYS 3GLY 116
B
 PRO 1PRO 1
B
 CYS 3GLY 115
C
 PRO 1PRO 1
C
 CYS 3GLY 116
D
 PRO 1PRO 1
D
 CYS 3GLY 116
E
 PRO 1PRO 1
E
 CYS 3SER 117
F
 PRO 1PRO 1
F
 CYS 3GLY 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2WKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 32Right-handed alpha
Helix 2
2
A
72 89Right-handed alpha
Helix 3
3
A
91 93Right-handed 310
Helix 4
4
A
112 114Right-handed 310
Helix 5
5
B
12 32Right-handed alpha
Helix 6
6
B
72 89Right-handed alpha
Helix 7
7
B
91 93Right-handed 310
Helix 8
8
B
112 114Right-handed 310
Helix 9
9
C
12 32Right-handed alpha
Helix 10
10
C
72 89Right-handed alpha
Helix 11
11
C
91 93Right-handed 310
Helix 12
12
C
112 114Right-handed 310
Helix 13
13
D
12 32Right-handed alpha
Helix 14
14
D
69 89Right-handed alpha
Helix 15
15
D
91 93Right-handed 310
Helix 16
16
D
112 114Right-handed 310
Helix 17
17
E
12 32Right-handed alpha
Helix 18
18
E
72 89Right-handed alpha
Helix 19
19
E
91 93Right-handed 310
Helix 20
20
E
112 114Right-handed 310
Helix 21
21
F
12 32Right-handed alpha
Helix 22
22
F
72 89Right-handed alpha
Helix 23
23
F
91 93Right-handed 310
Helix 24
24
F
102 104Right-handed 310
Helix 25
25
F
112 115Right-handed 310
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There are 12 sheets in PDB entry 2WKB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, A, DB, C, DD, EA, EB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
2 7parallel
Strand 3
A
58 63anti-parallel
Strand 4
A
95 100parallel
Strand 5
B
107 110anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
C
49 50anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
B
39 40anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
C
95 100anti-parallel
Strand 3
C
58 63parallel
Strand 4
C
2 7anti-parallel
Strand 5
C
42 44parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 44first strand
Strand 2
B
2 7parallel
Strand 3
B
58 63anti-parallel
Strand 4
B
95 100parallel
Strand 5
C
106 110anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
C
39 40anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 44first strand
Strand 2
D
2 7parallel
Strand 3
D
58 63anti-parallel
Strand 4
D
95 100parallel
Strand 5
E
108 110anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
F
49 50anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 50first strand
Strand 2
E
39 40anti-parallel
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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 110first strand
Strand 2
F
95 100anti-parallel
Strand 3
F
58 63parallel
Strand 4
F
2 7anti-parallel
Strand 5
F
42 44parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 44first strand
Strand 2
E
2 7parallel
Strand 3
E
58 63anti-parallel
Strand 4
E
95 100parallel
Strand 5
F
106 110anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 50first strand
Strand 2
F
39 40anti-parallel
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