Analysis of interatomic Contacts of Structural Units in PDB entry:
2WKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WKC entry

There are 4 chains in PDB entry 2WKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0THR 89
B
 GLY 0ILE 88
C
 GLY 0THR 89
D
 GLY 0SER 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2WKC

There are 7 sheets in PDB entry 2WKC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, CA, CB, CC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
B
58 70parallel
Strand 3
B
1 8anti-parallel
Strand 4
A
1 8anti-parallel
Strand 5
A
58 63anti-parallel
Strand 6
A
82 86anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
B
58 70parallel
Strand 3
B
73 86anti-parallel
Strand 4
B
44 48parallel
Strand 5
B
22 30anti-parallel
Strand 6
B
14 19anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
44 49anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
65 70anti-parallel
Strand 3
B
33 34parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
D
58 68parallel
Strand 3
D
1 8anti-parallel
Strand 4
C
1 8anti-parallel
Strand 5
C
58 70anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
D
58 68parallel
Strand 3
D
82 86anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 18first strand
Strand 2
C
23 30anti-parallel
Strand 3
C
44 48anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il