Analysis of interatomic Contacts of Structural Units in PDB entry:
2WL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2WL5 entry

There are 6 chains in PDB entry 2WL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LEU 88
A	GLY 90	LEU 392
B	SER 4	LEU 88
B	GLY 90	LEU 392
C	SER 4	LEU 392
D	SER 4	ARG 207

There are 69 helices in PDB entry 2WL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	26	43	Right-handed alpha
Helix 2	2	A	45	49	Right-handed 310
Helix 3	3	A	65	74	Right-handed alpha
Helix 4	4	A	87	89	Right-handed 310
Helix 5	5	A	90	105	Right-handed alpha
Helix 6	6	A	142	148	Right-handed alpha
Helix 7	7	A	156	169	Right-handed alpha
Helix 8	8	A	171	193	Right-handed alpha
Helix 9	9	A	224	231	Right-handed alpha
Helix 10	10	A	261	268	Right-handed alpha
Helix 11	11	A	284	290	Right-handed 310
Helix 12	12	A	291	304	Right-handed alpha
Helix 13	13	A	306	310	Right-handed 310
Helix 14	14	A	319	331	Right-handed alpha
Helix 15	15	A	333	336	Right-handed 310
Helix 16	16	A	342	347	Right-handed alpha
Helix 17	17	A	349	369	Right-handed alpha
Helix 18	18	B	26	43	Right-handed alpha
Helix 19	19	B	45	49	Right-handed 310
Helix 20	20	B	65	74	Right-handed alpha
Helix 21	21	B	87	89	Right-handed 310
Helix 22	22	B	90	105	Right-handed alpha
Helix 23	23	B	142	148	Right-handed alpha
Helix 24	24	B	156	169	Right-handed alpha
Helix 25	25	B	171	193	Right-handed alpha
Helix 26	26	B	224	230	Right-handed alpha
Helix 27	27	B	261	268	Right-handed alpha
Helix 28	28	B	284	290	Right-handed 310
Helix 29	29	B	291	304	Right-handed alpha
Helix 30	30	B	306	310	Right-handed 310
Helix 31	31	B	319	331	Right-handed alpha
Helix 32	32	B	333	336	Right-handed 310
Helix 33	33	B	342	347	Right-handed alpha
Helix 34	34	B	349	351	Right-handed 310
Helix 35	35	B	352	369	Right-handed alpha
Helix 36	36	C	26	43	Right-handed alpha
Helix 37	37	C	45	49	Right-handed 310
Helix 38	38	C	65	75	Right-handed alpha
Helix 39	39	C	87	89	Right-handed 310
Helix 40	40	C	90	105	Right-handed alpha
Helix 41	41	C	120	122	Right-handed 310
Helix 42	42	C	142	148	Right-handed alpha
Helix 43	43	C	156	169	Right-handed alpha
Helix 44	44	C	171	192	Right-handed alpha
Helix 45	45	C	224	229	Right-handed alpha
Helix 46	46	C	260	267	Right-handed alpha
Helix 47	47	C	284	290	Right-handed 310
Helix 48	48	C	291	304	Right-handed alpha
Helix 49	49	C	319	331	Right-handed alpha
Helix 50	50	C	333	336	Right-handed 310
Helix 51	51	C	342	347	Right-handed alpha
Helix 52	52	C	349	369	Right-handed alpha
Helix 53	53	D	26	43	Right-handed alpha
Helix 54	54	D	45	49	Right-handed 310
Helix 55	55	D	65	75	Right-handed alpha
Helix 56	56	D	87	89	Right-handed 310
Helix 57	57	D	90	105	Right-handed alpha
Helix 58	58	D	142	148	Right-handed alpha
Helix 59	59	D	156	168	Right-handed alpha
Helix 60	60	D	171	192	Right-handed alpha
Helix 61	61	D	224	229	Right-handed alpha
Helix 62	62	D	261	268	Right-handed alpha
Helix 63	63	D	284	290	Right-handed 310
Helix 64	64	D	291	304	Right-handed alpha
Helix 65	65	D	306	310	Right-handed 310
Helix 66	66	D	319	331	Right-handed alpha
Helix 67	67	D	333	336	Right-handed 310
Helix 68	68	D	342	347	Right-handed alpha
Helix 69	69	D	349	369	Right-handed alpha

There are 17 sheets in PDB entry 2WL5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, AD, AE, AF, BB, CA, CB, CC, A, CD, DB, CE, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	250	260	parallel

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There are 14 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	372	379	parallel
Strand 3	A	383	390	anti-parallel
Strand 4	A	273	282	anti-parallel
Strand 5	A	5	12	anti-parallel
Strand 6	A	250	260	anti-parallel
Strand 7	A	111	118	anti-parallel
Strand 8	A	51	55	parallel
Strand 9	A	81	86	parallel
Strand 10	B	81	86	anti-parallel
Strand 11	B	51	55	parallel
Strand 12	B	111	118	parallel
Strand 13	B	250	260	anti-parallel
Strand 14	B	16	17	parallel

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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	372	379	parallel
Strand 3	A	383	390	anti-parallel
Strand 4	A	273	282	anti-parallel
Strand 5	A	5	12	anti-parallel
Strand 6	A	250	260	anti-parallel
Strand 7	A	16	17	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	250	260	parallel

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There are 18 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	315	first strand
Strand 2	A	372	379	parallel
Strand 3	A	383	390	anti-parallel
Strand 4	A	273	282	anti-parallel
Strand 5	A	5	12	anti-parallel
Strand 6	A	250	260	anti-parallel
Strand 7	A	111	118	anti-parallel
Strand 8	A	51	55	parallel
Strand 9	A	81	86	parallel
Strand 10	B	81	86	anti-parallel
Strand 11	B	51	55	parallel
Strand 12	B	111	118	parallel
Strand 13	B	250	260	anti-parallel
Strand 14	B	5	12	anti-parallel
Strand 15	B	273	282	anti-parallel
Strand 16	B	383	390	anti-parallel
Strand 17	B	372	379	anti-parallel
Strand 18	B	312	315	parallel

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There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	B	124	126	anti-parallel
Strand 3	B	137	141	anti-parallel
Strand 4	C	137	141	anti-parallel
Strand 5	C	124	126	anti-parallel
Strand 6	D	124	126	anti-parallel
Strand 7	D	137	141	anti-parallel
Strand 8	A	137	141	anti-parallel
Strand 9	A	124	126	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	211	213	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	211	213	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	250	259	parallel

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There are 14 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	373	379	parallel
Strand 3	C	383	390	anti-parallel
Strand 4	C	273	282	anti-parallel
Strand 5	C	6	12	anti-parallel
Strand 6	C	250	259	anti-parallel
Strand 7	C	110	118	anti-parallel
Strand 8	C	51	55	parallel
Strand 9	C	81	86	parallel
Strand 10	D	81	86	anti-parallel
Strand 11	D	51	55	parallel
Strand 12	D	111	118	parallel
Strand 13	D	250	260	anti-parallel
Strand 14	D	16	17	parallel

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There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	373	379	parallel
Strand 3	C	383	390	anti-parallel
Strand 4	C	273	282	anti-parallel
Strand 5	C	6	12	anti-parallel
Strand 6	C	250	259	anti-parallel
Strand 7	C	16	17	parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	12	first strand
Strand 2	D	250	260	anti-parallel

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There are 14 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	315	first strand
Strand 2	C	373	379	parallel
Strand 3	C	383	390	anti-parallel
Strand 4	C	273	282	anti-parallel
Strand 5	C	6	12	anti-parallel
Strand 6	C	250	259	anti-parallel
Strand 7	C	110	118	anti-parallel
Strand 8	C	51	55	parallel
Strand 9	C	81	86	parallel
Strand 10	D	81	86	anti-parallel
Strand 11	D	51	55	parallel
Strand 12	D	111	118	parallel
Strand 13	D	250	260	anti-parallel
Strand 14	D	5	12	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	250	260	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	204	first strand
Strand 2	C	211	213	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	204	first strand
Strand 2	D	211	213	anti-parallel

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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	282	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	372	379	anti-parallel
Strand 4	D	312	315	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2WL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
2WL5