Analysis of interatomic Contacts of Structural Units in PDB entry:
2WM1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WM1 entry

There is 1 chain in PDB entry 2WM1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2WM1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 22Right-handed alpha
Helix 2
2
A
52 54Right-handed 310
Helix 3
3
A
55 67Right-handed alpha
Helix 4
4
A
76 81Right-handed 310
Helix 5
5
A
85 107Right-handed alpha
Helix 6
6
A
121 135Right-handed alpha
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
157 168Right-handed alpha
Helix 9
9
A
181 185Right-handed 310
Helix 10
10
A
188 193Right-handed alpha
Helix 11
11
A
193 209Right-handed alpha
Helix 12
12
A
210 215Right-handed alpha
Helix 13
13
A
224 227Right-handed 310
Helix 14
14
A
228 248Right-handed alpha
Helix 15
15
A
254 259Right-handed 310
Helix 16
16
A
270 282Right-handed alpha
Helix 17
17
A
302 307Right-handed alpha
Helix 18
18
A
312 321Right-handed alpha
Helix 19
19
A
321 329Right-handed alpha
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There are 3 sheets in PDB entry 2WM1. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
70 74parallel
Strand 3
A
111 115parallel
Strand 4
A
140 144parallel
Strand 5
A
170 174parallel
Strand 6
A
220 222parallel
Strand 7
A
263 265parallel
Strand 8
A
286 287parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 33first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
44 50anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
A
150 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il