Analysis of interatomic Contacts of Structural Units in PDB entry:
2WM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WM9 entry

There are 2 chains in PDB entry 2WM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5LEU 427
B
 SER -1LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 2WM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 25Right-handed alpha
Helix 2
2
A
26 48Right-handed alpha
Helix 3
3
A
54 59Right-handed 310
Helix 4
4
A
62 69Right-handed 310
Helix 5
5
A
83 101Right-handed alpha
Helix 6
6
A
103 105Right-handed 310
Helix 7
7
A
106 112Right-handed alpha
Helix 8
8
A
114 121Right-handed alpha
Helix 9
9
A
123 148Right-handed alpha
Helix 10
10
A
162 167Right-handed alpha
Helix 11
11
A
168 170Right-handed 310
Helix 12
12
A
183 200Right-handed alpha
Helix 13
13
A
214 218Right-handed 310
Helix 14
14
A
235 242Right-handed alpha
Helix 15
15
A
245 249Right-handed 310
Helix 16
16
A
305 327Right-handed alpha
Helix 17
17
A
331 344Right-handed alpha
Helix 18
18
A
351 359Right-handed alpha
Helix 19
19
A
371 397Right-handed alpha
Helix 20
20
A
402 424Right-handed alpha
Helix 21
21
B
15 26Right-handed alpha
Helix 22
22
B
61 65Right-handed 310
Helix 23
23
B
67 72Right-handed 310
Helix 24
24
B
86 96Right-handed alpha
Helix 25
25
B
96 105Right-handed alpha
Helix 26
26
B
116 121Right-handed 310
Helix 27
27
B
122 131Right-handed alpha
Helix 28
28
B
138 150Right-handed alpha
Helix 29
29
B
164 177Right-handed alpha
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There are 2 sheets in PDB entry 2WM9. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 161first strand
Strand 2
A
173 178anti-parallel
Strand 3
A
293 304anti-parallel
Strand 4
A
275 287anti-parallel
Strand 5
A
252 261anti-parallel
Strand 6
A
223 232parallel
Strand 7
A
154 161anti-parallel
Strand 8
A
173 178anti-parallel
Strand 9
A
154 161anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
3 10parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
154 156parallel
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