Analysis of interatomic Contacts of Structural Units in PDB entry:
2WMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WMI entry

There are 2 chains in PDB entry 2WMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 422PHE 1005
B
 VAL 422PHE 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 2WMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
442 448Right-handed alpha
Helix 2
2
A
458 466Right-handed alpha
Helix 3
3
A
470 472Right-handed 310
Helix 4
4
A
488 503Right-handed alpha
Helix 5
5
A
525 527Right-handed 310
Helix 6
6
A
531 536Right-handed 310
Helix 7
7
A
537 548Right-handed alpha
Helix 8
8
A
566 582Right-handed alpha
Helix 9
9
A
591 593Right-handed 310
Helix 10
10
A
594 600Right-handed alpha
Helix 11
11
A
606 616Right-handed alpha
Helix 12
12
A
627 631Right-handed 310
Helix 13
13
A
632 646Right-handed alpha
Helix 14
14
A
659 664Right-handed alpha
Helix 15
15
A
679 684Right-handed alpha
Helix 16
16
A
688 701Right-handed alpha
Helix 17
17
A
711 716Right-handed alpha
Helix 18
18
A
723 729Right-handed alpha
Helix 19
19
A
729 740Right-handed alpha
Helix 20
20
A
744 752Right-handed alpha
Helix 21
21
A
759 763Right-handed 310
Helix 22
22
A
764 770Right-handed 310
Helix 23
23
A
820 824Right-handed 310
Helix 24
24
A
825 837Right-handed alpha
Helix 25
25
A
908 913Right-handed 310
Helix 26
26
A
917 923Right-handed alpha
Helix 27
27
A
928 940Right-handed alpha
Helix 28
28
A
984 986Right-handed 310
Helix 29
29
B
442 447Right-handed alpha
Helix 30
30
B
458 466Right-handed alpha
Helix 31
31
B
470 472Right-handed 310
Helix 32
32
B
488 504Right-handed alpha
Helix 33
33
B
525 527Right-handed 310
Helix 34
34
B
531 536Right-handed 310
Helix 35
35
B
537 548Right-handed alpha
Helix 36
36
B
566 581Right-handed alpha
Helix 37
37
B
591 593Right-handed 310
Helix 38
38
B
594 600Right-handed alpha
Helix 39
39
B
606 616Right-handed alpha
Helix 40
40
B
627 631Right-handed 310
Helix 41
41
B
632 646Right-handed alpha
Helix 42
42
B
659 664Right-handed alpha
Helix 43
43
B
679 684Right-handed alpha
Helix 44
44
B
688 701Right-handed alpha
Helix 45
45
B
711 716Right-handed alpha
Helix 46
46
B
723 729Right-handed alpha
Helix 47
47
B
729 740Right-handed alpha
Helix 48
48
B
744 752Right-handed alpha
Helix 49
49
B
759 763Right-handed 310
Helix 50
50
B
764 769Right-handed 310
Helix 51
51
B
820 824Right-handed 310
Helix 52
52
B
825 837Right-handed alpha
Helix 53
53
B
908 913Right-handed 310
Helix 54
54
B
917 923Right-handed alpha
Helix 55
55
B
928 940Right-handed alpha
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There are 10 sheets in PDB entry 2WMI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 440first strand
Strand 2
A
706 710parallel
Strand 3
A
651 657parallel
Strand 4
A
619 624parallel
Strand 5
A
584 588parallel
Strand 6
A
551 557parallel
Strand 7
A
517 523parallel
Strand 8
A
474 479parallel
Strand 9
A
434 440parallel
Strand 10
A
434 440first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
721 722anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 793first strand
Strand 2
A
754 757parallel
Strand 3
A
814 817parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 850first strand
Strand 2
A
853 857anti-parallel
Strand 3
A
887 893anti-parallel
Strand 4
A
896 902anti-parallel
Strand 5
A
998 1004anti-parallel
Strand 6
A
964 970anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
867 872first strand
Strand 2
A
877 882anti-parallel
Strand 3
A
950 957anti-parallel
Strand 4
A
988 995anti-parallel
Strand 5
A
979 983anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 440first strand
Strand 2
B
706 710parallel
Strand 3
B
651 657parallel
Strand 4
B
619 624parallel
Strand 5
B
584 588parallel
Strand 6
B
551 557parallel
Strand 7
B
517 523parallel
Strand 8
B
474 479parallel
Strand 9
B
434 440parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
717 718first strand
Strand 2
B
721 722anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
792 793first strand
Strand 2
B
754 757parallel
Strand 3
B
814 817parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
846 850first strand
Strand 2
B
853 857anti-parallel
Strand 3
B
887 893anti-parallel
Strand 4
B
896 902anti-parallel
Strand 5
B
998 1004anti-parallel
Strand 6
B
964 970anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
867 873first strand
Strand 2
B
876 882anti-parallel
Strand 3
B
950 957anti-parallel
Strand 4
B
988 995anti-parallel
Strand 5
B
979 983anti-parallel
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