Analysis of interatomic Contacts of Structural Units in PDB entry:
2WMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WMM entry

There are 2 chains in PDB entry 2WMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 643LEU 804
B
 HIS 643LEU 804
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2WMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
643 664Right-handed alpha
Helix 2
2
A
673 682Right-handed alpha
Helix 3
3
A
686 690Right-handed alpha
Helix 4
4
A
697 705Right-handed alpha
Helix 5
5
A
707 710Right-handed 310
Helix 6
6
A
716 719Right-handed 310
Helix 7
7
A
720 725Right-handed alpha
Helix 8
8
A
779 803Right-handed alpha
Helix 9
9
B
643 665Right-handed alpha
Helix 10
10
B
673 681Right-handed alpha
Helix 11
11
B
686 690Right-handed alpha
Helix 12
12
B
697 705Right-handed alpha
Helix 13
13
B
707 710Right-handed 310
Helix 14
14
B
716 719Right-handed 310
Helix 15
15
B
720 725Right-handed alpha
Helix 16
16
B
779 804Right-handed alpha
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There are 2 sheets in PDB entry 2WMM. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
712 714anti-parallel
Strand 3
A
734 738parallel
Strand 4
B
766 771anti-parallel
Strand 5
B
757 763anti-parallel
Strand 6
B
750 754anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
750 754first strand
Strand 2
A
757 763anti-parallel
Strand 3
A
766 771anti-parallel
Strand 4
B
734 738anti-parallel
Strand 5
B
712 714parallel
Strand 6
B
684 685anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il