Analysis of interatomic Contacts of Structural Units in PDB entry:
2WN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2WN8 entry

There is 1 chain in PDB entry 2WN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25PRO 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2WN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 37Right-handed alpha
Helix 2
2
A
39 52Right-handed alpha
Helix 3
3
A
53 63Right-handed alpha
Helix 4
4
A
64 66Right-handed 310
Helix 5
5
A
67 74Right-handed alpha
Helix 6
6
A
76 89Right-handed alpha
Helix 7
7
A
103 108Right-handed 310
Helix 8
8
A
122 134Right-handed alpha
Helix 9
9
A
237 242Right-handed alpha
Helix 10
10
A
243 255Right-handed alpha
Helix 11
11
A
258 267Right-handed alpha
Helix 12
12
A
275 292Right-handed alpha
Helix 13
13
A
322 334Right-handed alpha
Helix 14
14
A
353 357Right-handed 310
Helix 15
15
A
376 379Right-handed 310
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There are 4 sheets in PDB entry 2WN8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 102first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
206 215parallel
Strand 4
A
191 201anti-parallel
Strand 5
A
138 139anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
174 176anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 304first strand
Strand 2
A
361 367anti-parallel
Strand 3
A
410 418parallel
Strand 4
A
395 405anti-parallel
Strand 5
A
337 339anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
387 390anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il